Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 AC080038.3-201ENST00000623346 1952 ntBASIC20.8■□□□□ 0.92
CDX2Q99626 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.8■□□□□ 0.92
CDX2Q99626 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 AL645929.1-201ENST00000420084 975 ntBASIC20.8■□□□□ 0.92
CDX2Q99626 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
CDX2Q99626 AP003041.3-201ENST00000527151 707 ntBASIC20.8■□□□□ 0.92
CDX2Q99626 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.8■□□□□ 0.92
CDX2Q99626 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.8■□□□□ 0.92
CDX2Q99626 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX2Q99626 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 TSPY19P-201ENST00000418461 509 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 SPDYE15P-201ENST00000424157 909 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 TSPY18P-201ENST00000441642 509 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.79■□□□□ 0.92
CDX2Q99626 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CDX2Q99626 AC120114.3-201ENST00000611923 658 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 HLA-A-209ENST00000638375 975 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CDX2Q99626 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX2Q99626 AC011484.1-201ENST00000377652 1995 ntBASIC20.79■□□□□ 0.92
CDX2Q99626 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX2Q99626 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.79■□□□□ 0.92
CDX2Q99626 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.78■□□□□ 0.92
CDX2Q99626 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.78■□□□□ 0.92
CDX2Q99626 AC016734.2-201ENST00000624325 1377 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 CA15P1-201ENST00000481698 905 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.78■□□□□ 0.92
CDX2Q99626 AP002469.2-201ENST00000531724 424 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 AL662844.1-201ENST00000546340 181 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 LINC02084-201ENST00000606069 1096 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CDX2Q99626 MIR2861-201ENST00000636310 90 ntBASIC20.78■□□□□ 0.92
CDX2Q99626 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX2Q99626 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.77■□□□□ 0.92
CDX2Q99626 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.77■□□□□ 0.92
CDX2Q99626 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 AP002383.4-201ENST00000442518 975 ntBASIC20.77■□□□□ 0.92
CDX2Q99626 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
CDX2Q99626 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 AL121672.3-201ENST00000608644 468 ntBASIC20.77■□□□□ 0.92
CDX2Q99626 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
CDX2Q99626 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX2Q99626 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX2Q99626 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CDX2Q99626 KRT18P1-202ENST00000452408 1331 ntBASIC20.77■□□□□ 0.91
CDX2Q99626 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.76■□□□□ 0.91
CDX2Q99626 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX2Q99626 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CDX2Q99626 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 BX276092.5-203ENST00000456199 560 ntBASIC20.76■□□□□ 0.91
CDX2Q99626 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CDX2Q99626 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX2Q99626 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX2Q99626 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 BX640515.1-201ENST00000617215 977 ntBASIC20.76■□□□□ 0.91
CDX2Q99626 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 KRT8P8-201ENST00000434750 1448 ntBASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms