Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC33.02■■■□□ 2.88
IFT140Q96RY7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC33.02■■■□□ 2.88
IFT140Q96RY7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC33.02■■■□□ 2.88
IFT140Q96RY7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC33.02■■■□□ 2.88
IFT140Q96RY7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC33.01■■■□□ 2.88
IFT140Q96RY7 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
IFT140Q96RY7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC33.01■■■□□ 2.88
IFT140Q96RY7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC33.01■■■□□ 2.88
IFT140Q96RY7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC33.01■■■□□ 2.87
IFT140Q96RY7 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
IFT140Q96RY7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
IFT140Q96RY7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
IFT140Q96RY7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
IFT140Q96RY7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
IFT140Q96RY7 STARP1-201ENST00000397973 869 ntBASIC33■■■□□ 2.87
IFT140Q96RY7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC33■■■□□ 2.87
IFT140Q96RY7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC33■■■□□ 2.87
IFT140Q96RY7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
IFT140Q96RY7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC33■■■□□ 2.87
IFT140Q96RY7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC33■■■□□ 2.87
IFT140Q96RY7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
IFT140Q96RY7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
IFT140Q96RY7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC32.99■■■□□ 2.87
IFT140Q96RY7 AC004870.1-201ENST00000315132 882 ntBASIC32.99■■■□□ 2.87
IFT140Q96RY7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
IFT140Q96RY7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
IFT140Q96RY7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 PRELID1P1-202ENST00000567272 903 ntBASIC32.99■■■□□ 2.87
IFT140Q96RY7 AC140113.3-201ENST00000605663 199 ntBASIC32.99■■■□□ 2.87
IFT140Q96RY7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC32.99■■■□□ 2.87
IFT140Q96RY7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
IFT140Q96RY7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC32.98■■■□□ 2.87
IFT140Q96RY7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
IFT140Q96RY7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC32.98■■■□□ 2.87
IFT140Q96RY7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC32.98■■■□□ 2.87
IFT140Q96RY7 FAAHP1-202ENST00000446499 1238 ntBASIC32.98■■■□□ 2.87
IFT140Q96RY7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC32.98■■■□□ 2.87
IFT140Q96RY7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC32.98■■■□□ 2.87
IFT140Q96RY7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
IFT140Q96RY7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC32.97■■■□□ 2.87
IFT140Q96RY7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC32.97■■■□□ 2.87
IFT140Q96RY7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
IFT140Q96RY7 SPDYE15P-201ENST00000424157 909 ntBASIC32.97■■■□□ 2.87
IFT140Q96RY7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC32.97■■■□□ 2.87
IFT140Q96RY7 AP003041.3-201ENST00000527151 707 ntBASIC32.97■■■□□ 2.87
IFT140Q96RY7 AC092119.3-201ENST00000612618 583 ntBASIC32.97■■■□□ 2.87
IFT140Q96RY7 AC018553.1-201ENST00000616682 1458 ntBASIC32.97■■■□□ 2.87
IFT140Q96RY7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC32.97■■■□□ 2.87
IFT140Q96RY7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
IFT140Q96RY7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC32.96■■■□□ 2.87
IFT140Q96RY7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
IFT140Q96RY7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
IFT140Q96RY7 AP000523.1-201ENST00000398242 1049 ntBASIC32.96■■■□□ 2.87
IFT140Q96RY7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC32.96■■■□□ 2.87
IFT140Q96RY7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC32.96■■■□□ 2.87
IFT140Q96RY7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
IFT140Q96RY7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
IFT140Q96RY7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC32.96■■■□□ 2.87
IFT140Q96RY7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
IFT140Q96RY7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
IFT140Q96RY7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
IFT140Q96RY7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC32.95■■■□□ 2.87
IFT140Q96RY7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC32.95■■■□□ 2.86
IFT140Q96RY7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
IFT140Q96RY7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
IFT140Q96RY7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
IFT140Q96RY7 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
IFT140Q96RY7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
IFT140Q96RY7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
IFT140Q96RY7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
IFT140Q96RY7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC32.94■■■□□ 2.86
IFT140Q96RY7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC32.94■■■□□ 2.86
IFT140Q96RY7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC32.93■■■□□ 2.86
IFT140Q96RY7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC32.93■■■□□ 2.86
IFT140Q96RY7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC32.93■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms