Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 CYP2T1P-201ENST00000432607 1285 ntBASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRIF1Q5T3J3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 AC069236.1-201ENST00000604339 616 ntBASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 LINC01465-201ENST00000408887 1940 ntBASIC18.61■□□□□ 0.57
LRIF1Q5T3J3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC093503.3-201ENST00000624917 2352 ntBASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AL355472.2-201ENST00000422958 438 ntBASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 KRT18P5-201ENST00000436075 1291 ntBASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 C2orf69P4-201ENST00000565394 541 ntBASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 AC087623.3-201ENST00000607047 1098 ntBASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LRIF1Q5T3J3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LRIF1Q5T3J3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.59■□□□□ 0.57
LRIF1Q5T3J3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms