Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RNF4P78317 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF4P78317 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
RNF4P78317 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF4P78317 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF4P78317 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF4P78317 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF4P78317 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.3■□□□□ 0.52
RNF4P78317 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RNF4P78317 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RNF4P78317 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.3■□□□□ 0.52
RNF4P78317 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
RNF4P78317 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF4P78317 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
RNF4P78317 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.29■□□□□ 0.52
RNF4P78317 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RNF4P78317 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF4P78317 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF4P78317 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.29■□□□□ 0.52
RNF4P78317 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF4P78317 AC066615.1-201ENST00000640911 628 ntBASIC18.29■□□□□ 0.52
RNF4P78317 AP006294.2-201ENST00000641667 209 ntBASIC18.29■□□□□ 0.52
RNF4P78317 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF4P78317 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RNF4P78317 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.29■□□□□ 0.52
RNF4P78317 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF4P78317 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RNF4P78317 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.29■□□□□ 0.52
RNF4P78317 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
RNF4P78317 AP006587.1-201ENST00000534129 1502 ntBASIC18.28■□□□□ 0.52
RNF4P78317 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.28■□□□□ 0.52
RNF4P78317 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF4P78317 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RNF4P78317 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
RNF4P78317 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF4P78317 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.28■□□□□ 0.52
RNF4P78317 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RNF4P78317 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.28■□□□□ 0.52
RNF4P78317 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.28■□□□□ 0.52
RNF4P78317 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.28■□□□□ 0.52
RNF4P78317 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF4P78317 AP001271.2-201ENST00000624018 1556 ntBASIC18.28■□□□□ 0.52
RNF4P78317 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF4P78317 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF4P78317 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF4P78317 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF4P78317 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF4P78317 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms