Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXD11P31277 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD11P31277 AC006011.2-201ENST00000621313 1158 ntBASIC20.81■□□□□ 0.92
HOXD11P31277 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXD11P31277 AP000550.4-202ENST00000639755 178 ntBASIC20.81■□□□□ 0.92
HOXD11P31277 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
HOXD11P31277 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD11P31277 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HOXD11P31277 ARL9-201ENST00000360096 1392 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD11P31277 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD11P31277 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HOXD11P31277 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXD11P31277 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 C9orf135-201ENST00000377197 873 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HOXD11P31277 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXD11P31277 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXD11P31277 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXD11P31277 CARD8-214ENST00000520007 614 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXD11P31277 AP001010.1-201ENST00000588397 538 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXD11P31277 CLEC4GP1-201ENST00000596555 870 ntBASIC20.8■□□□□ 0.92
HOXD11P31277 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXD11P31277 AC044839.1-208ENST00000634902 917 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXD11P31277 AC106858.1-201ENST00000637497 429 ntBASIC20.8■□□□□ 0.92
HOXD11P31277 CASC19-208ENST00000641056 1292 ntBASIC20.8■□□□□ 0.92
HOXD11P31277 CASC19-227ENST00000641411 1285 ntBASIC20.8■□□□□ 0.92
HOXD11P31277 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD11P31277 AC010460.3-201ENST00000511359 1579 ntBASIC20.8■□□□□ 0.92
HOXD11P31277 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXD11P31277 FXR1-220ENST00000491062 1768 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXD11P31277 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 AC096887.2-201ENST00000623443 1957 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 MFAP3L-202ENST00000393702 1505 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 AL133325.2-201ENST00000431034 449 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 FDX1P1-201ENST00000449115 551 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 RASA2-IT1-201ENST00000507770 612 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC20.79■□□□□ 0.92
HOXD11P31277 AP005136.2-201ENST00000583253 1049 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD11P31277 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 AC253576.2-201ENST00000618815 580 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 AP003072.3-201ENST00000623456 594 ntBASIC20.79■□□□□ 0.92
HOXD11P31277 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
HOXD11P31277 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXD11P31277 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
HOXD11P31277 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD11P31277 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HOXD11P31277 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXD11P31277 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXD11P31277 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD11P31277 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD11P31277 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.78■□□□□ 0.92
HOXD11P31277 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXD11P31277 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXD11P31277 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 AL137802.2-201ENST00000562878 1110 ntBASIC20.78■□□□□ 0.92
HOXD11P31277 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXD11P31277 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXD11P31277 AL023806.2-201ENST00000603042 263 ntBASIC20.78■□□□□ 0.92
HOXD11P31277 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HOXD11P31277 AC090772.4-201ENST00000623599 362 ntBASIC20.78■□□□□ 0.92
HOXD11P31277 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD11P31277 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD11P31277 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD11P31277 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD11P31277 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD11P31277 RBMS1-204ENST00000409289 1490 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXD11P31277 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD11P31277 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD11P31277 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
HOXD11P31277 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD11P31277 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXD11P31277 TPTE2P3-201ENST00000441562 1189 ntBASIC20.77■□□□□ 0.92
HOXD11P31277 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC20.77■□□□□ 0.92
HOXD11P31277 LDHBP3-201ENST00000514909 822 ntBASIC20.77■□□□□ 0.92
HOXD11P31277 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXD11P31277 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms