Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.28■□□□□ 0.36
COL8A1P27658 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL8A1P27658 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.28■□□□□ 0.36
COL8A1P27658 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 DGCR10-201ENST00000609839 495 ntBASIC17.28■□□□□ 0.36
COL8A1P27658 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL8A1P27658 AC006538.3-201ENST00000612495 578 ntBASIC17.28■□□□□ 0.36
COL8A1P27658 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL8A1P27658 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL8A1P27658 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
COL8A1P27658 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.27■□□□□ 0.36
COL8A1P27658 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL8A1P27658 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL8A1P27658 TSPY21P-201ENST00000433481 731 ntBASIC17.27■□□□□ 0.36
COL8A1P27658 TSPY23P-201ENST00000440136 739 ntBASIC17.27■□□□□ 0.36
COL8A1P27658 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.27■□□□□ 0.36
COL8A1P27658 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL8A1P27658 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.27■□□□□ 0.36
COL8A1P27658 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.27■□□□□ 0.36
COL8A1P27658 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
COL8A1P27658 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.27■□□□□ 0.36
COL8A1P27658 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.27■□□□□ 0.36
COL8A1P27658 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL8A1P27658 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.27■□□□□ 0.36
COL8A1P27658 AC130371.2-201ENST00000619443 611 ntBASIC17.27■□□□□ 0.36
COL8A1P27658 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL8A1P27658 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
COL8A1P27658 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL8A1P27658 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.27■□□□□ 0.35
COL8A1P27658 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.27■□□□□ 0.35
COL8A1P27658 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL8A1P27658 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL8A1P27658 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.26■□□□□ 0.35
COL8A1P27658 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.26■□□□□ 0.35
COL8A1P27658 AP000593.1-201ENST00000393668 712 ntBASIC17.26■□□□□ 0.35
COL8A1P27658 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.26■□□□□ 0.35
COL8A1P27658 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL8A1P27658 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.26■□□□□ 0.35
COL8A1P27658 FDX1P1-201ENST00000449115 551 ntBASIC17.26■□□□□ 0.35
COL8A1P27658 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.26■□□□□ 0.35
COL8A1P27658 AC141257.4-201ENST00000634557 245 ntBASIC17.26■□□□□ 0.35
COL8A1P27658 AC136944.6-201ENST00000634818 245 ntBASIC17.26■□□□□ 0.35
COL8A1P27658 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.26■□□□□ 0.35
COL8A1P27658 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL8A1P27658 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.26■□□□□ 0.35
COL8A1P27658 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL8A1P27658 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.26■□□□□ 0.35
COL8A1P27658 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL8A1P27658 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.25■□□□□ 0.35
COL8A1P27658 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL8A1P27658 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
COL8A1P27658 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.25■□□□□ 0.35
COL8A1P27658 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.25■□□□□ 0.35
COL8A1P27658 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.25■□□□□ 0.35
COL8A1P27658 KRT18P16-201ENST00000510337 1294 ntBASIC17.25■□□□□ 0.35
COL8A1P27658 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.25■□□□□ 0.35
COL8A1P27658 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.25■□□□□ 0.35
COL8A1P27658 AC026271.3-201ENST00000571884 352 ntBASIC17.25■□□□□ 0.35
COL8A1P27658 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.25■□□□□ 0.35
COL8A1P27658 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.25■□□□□ 0.35
COL8A1P27658 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
COL8A1P27658 AC116562.4-202ENST00000641738 218 ntBASIC17.25■□□□□ 0.35
COL8A1P27658 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL8A1P27658 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms