Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.21■□□□□ 0.67
PCNAP12004 HLA-G-202ENST00000376815 851 ntBASIC19.21■□□□□ 0.67
PCNAP12004 HLA-G-203ENST00000376818 1127 ntBASIC19.21■□□□□ 0.67
PCNAP12004 GPX1P1-201ENST00000388829 606 ntBASIC19.21■□□□□ 0.67
PCNAP12004 KRT16P6-202ENST00000425692 1426 ntBASIC19.21■□□□□ 0.67
PCNAP12004 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.21■□□□□ 0.67
PCNAP12004 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.21■□□□□ 0.67
PCNAP12004 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.21■□□□□ 0.67
PCNAP12004 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.21■□□□□ 0.67
PCNAP12004 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.21■□□□□ 0.67
PCNAP12004 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.21■□□□□ 0.67
PCNAP12004 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PCNAP12004 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 AL020996.1-203ENST00000536896 2307 ntBASIC19.2■□□□□ 0.66
PCNAP12004 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.2■□□□□ 0.66
PCNAP12004 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 NCF1B-203ENST00000435988 1254 ntBASIC19.2■□□□□ 0.66
PCNAP12004 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PCNAP12004 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.2■□□□□ 0.66
PCNAP12004 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.2■□□□□ 0.66
PCNAP12004 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PCNAP12004 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.2■□□□□ 0.66
PCNAP12004 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.2■□□□□ 0.66
PCNAP12004 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCNAP12004 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.2■□□□□ 0.66
PCNAP12004 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.19■□□□□ 0.66
PCNAP12004 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.19■□□□□ 0.66
PCNAP12004 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.19■□□□□ 0.66
PCNAP12004 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.19■□□□□ 0.66
PCNAP12004 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.19■□□□□ 0.66
PCNAP12004 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.19■□□□□ 0.66
PCNAP12004 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.19■□□□□ 0.66
PCNAP12004 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCNAP12004 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PCNAP12004 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PCNAP12004 DUSP5P2-201ENST00000426873 1033 ntBASIC19.18■□□□□ 0.66
PCNAP12004 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.18■□□□□ 0.66
PCNAP12004 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.18■□□□□ 0.66
PCNAP12004 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PCNAP12004 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.18■□□□□ 0.66
PCNAP12004 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
PCNAP12004 AC116562.4-201ENST00000641316 2276 ntBASIC19.18■□□□□ 0.66
PCNAP12004 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
PCNAP12004 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PCNAP12004 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCNAP12004 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.17■□□□□ 0.66
PCNAP12004 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.17■□□□□ 0.66
PCNAP12004 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.17■□□□□ 0.66
PCNAP12004 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 TSPY6P-201ENST00000448518 926 ntBASIC19.17■□□□□ 0.66
PCNAP12004 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.17■□□□□ 0.66
PCNAP12004 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.17■□□□□ 0.66
PCNAP12004 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.17■□□□□ 0.66
PCNAP12004 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCNAP12004 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms