Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.33■□□□□ 0.69
HOXC4P09017 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC4P09017 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC4P09017 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.33■□□□□ 0.68
HOXC4P09017 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC4P09017 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC4P09017 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC4P09017 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC4P09017 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC4P09017 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC4P09017 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC4P09017 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 TSPY15P-201ENST00000457163 923 ntBASIC19.32■□□□□ 0.68
HOXC4P09017 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXC4P09017 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC4P09017 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXC4P09017 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.32■□□□□ 0.68
HOXC4P09017 REXO1L10P-201ENST00000615707 1290 ntBASIC19.32■□□□□ 0.68
HOXC4P09017 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
HOXC4P09017 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC4P09017 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HOXC4P09017 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXC4P09017 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC4P09017 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.31■□□□□ 0.68
HOXC4P09017 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC4P09017 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
HOXC4P09017 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
HOXC4P09017 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC4P09017 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC4P09017 KRT8P8-201ENST00000434750 1448 ntBASIC19.31■□□□□ 0.68
HOXC4P09017 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC4P09017 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC4P09017 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 AC211429.1-201ENST00000415277 523 ntBASIC19.3■□□□□ 0.68
HOXC4P09017 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.3■□□□□ 0.68
HOXC4P09017 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.3■□□□□ 0.68
HOXC4P09017 AC131212.4-201ENST00000623606 975 ntBASIC19.3■□□□□ 0.68
HOXC4P09017 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.3■□□□□ 0.68
HOXC4P09017 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC4P09017 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC4P09017 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC4P09017 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC4P09017 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC4P09017 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 UNC93B2-201ENST00000285383 730 ntBASIC19.29■□□□□ 0.68
HOXC4P09017 RBM17P1-201ENST00000453646 1190 ntBASIC19.29■□□□□ 0.68
HOXC4P09017 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.29■□□□□ 0.68
HOXC4P09017 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC4P09017 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HOXC4P09017 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
HOXC4P09017 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC4P09017 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC4P09017 FSCN1P1-201ENST00000568912 1481 ntBASIC19.28■□□□□ 0.68
HOXC4P09017 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.28■□□□□ 0.68
HOXC4P09017 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC4P09017 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms