Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 FAM210CP-201ENST00000445714 574 ntBASIC23.35■■□□□ 1.33
HLA-DOAP06340 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
HLA-DOAP06340 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.35■■□□□ 1.33
HLA-DOAP06340 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.35■■□□□ 1.33
HLA-DOAP06340 AC097493.4-201ENST00000641197 219 ntBASIC23.35■■□□□ 1.33
HLA-DOAP06340 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HLA-DOAP06340 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HLA-DOAP06340 BX119927.1-201ENST00000636596 1552 ntBASIC23.34■■□□□ 1.33
HLA-DOAP06340 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
HLA-DOAP06340 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 AC116562.2-201ENST00000507042 360 ntBASIC23.33■■□□□ 1.33
HLA-DOAP06340 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 AC012306.2-201ENST00000609350 630 ntBASIC23.33■■□□□ 1.33
HLA-DOAP06340 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23.33■■□□□ 1.33
HLA-DOAP06340 AL445675.2-201ENST00000620291 557 ntBASIC23.33■■□□□ 1.33
HLA-DOAP06340 AL031985.4-201ENST00000642138 673 ntBASIC23.33■■□□□ 1.33
HLA-DOAP06340 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
HLA-DOAP06340 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.33■■□□□ 1.32
HLA-DOAP06340 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HLA-DOAP06340 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
HLA-DOAP06340 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HLA-DOAP06340 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 AC079598.2-202ENST00000546624 1451 ntBASIC23.32■■□□□ 1.32
HLA-DOAP06340 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 AP000525.1-201ENST00000608286 694 ntBASIC23.32■■□□□ 1.32
HLA-DOAP06340 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HLA-DOAP06340 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
HLA-DOAP06340 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 AC020907.5-201ENST00000624372 1936 ntBASIC23.31■■□□□ 1.32
HLA-DOAP06340 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
HLA-DOAP06340 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HLA-DOAP06340 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DOAP06340 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DOAP06340 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 AC026271.3-201ENST00000571884 352 ntBASIC23.3■■□□□ 1.32
HLA-DOAP06340 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DOAP06340 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
HLA-DOAP06340 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
HLA-DOAP06340 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HLA-DOAP06340 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.29■■□□□ 1.32
HLA-DOAP06340 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms