Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SAPCD2P4-201ENST00000424595 1171 ntBASIC26.25■■□□□ 1.79
COL3A1P02461 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL3A1P02461 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.25■■□□□ 1.79
COL3A1P02461 AL355075.4-201ENST00000554988 638 ntBASIC26.25■■□□□ 1.79
COL3A1P02461 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC26.25■■□□□ 1.79
COL3A1P02461 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC26.25■■□□□ 1.79
COL3A1P02461 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL3A1P02461 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL3A1P02461 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC26.25■■□□□ 1.79
COL3A1P02461 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
COL3A1P02461 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL3A1P02461 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL3A1P02461 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL3A1P02461 SRI-203ENST00000419179 1307 ntTSL 2 BASIC26.24■■□□□ 1.79
COL3A1P02461 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL3A1P02461 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC26.23■■□□□ 1.79
COL3A1P02461 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC26.23■■□□□ 1.79
COL3A1P02461 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL3A1P02461 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC26.23■■□□□ 1.79
COL3A1P02461 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL3A1P02461 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
COL3A1P02461 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL3A1P02461 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
COL3A1P02461 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC26.23■■□□□ 1.79
COL3A1P02461 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC26.23■■□□□ 1.79
COL3A1P02461 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC26.23■■□□□ 1.79
COL3A1P02461 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC26.22■■□□□ 1.79
COL3A1P02461 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC26.22■■□□□ 1.79
COL3A1P02461 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.22■■□□□ 1.79
COL3A1P02461 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 ABBA01031674.1-201ENST00000635145 728 ntBASIC26.22■■□□□ 1.79
COL3A1P02461 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL3A1P02461 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC26.21■■□□□ 1.79
COL3A1P02461 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
COL3A1P02461 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC26.21■■□□□ 1.79
COL3A1P02461 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 TSPY15P-201ENST00000457163 923 ntBASIC26.21■■□□□ 1.79
COL3A1P02461 NUDT16P1-203ENST00000513809 620 ntBASIC26.21■■□□□ 1.79
COL3A1P02461 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC26.21■■□□□ 1.79
COL3A1P02461 CD177P1-201ENST00000606252 935 ntBASIC26.21■■□□□ 1.79
COL3A1P02461 SNX21-213ENST00000614929 587 ntTSL 5 BASIC26.21■■□□□ 1.79
COL3A1P02461 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC26.21■■□□□ 1.79
COL3A1P02461 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL3A1P02461 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
COL3A1P02461 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC26.2■■□□□ 1.78
COL3A1P02461 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC26.2■■□□□ 1.78
COL3A1P02461 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL3A1P02461 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC26.2■■□□□ 1.78
COL3A1P02461 FAM197Y1-201ENST00000421178 764 ntBASIC26.2■■□□□ 1.78
COL3A1P02461 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.2■■□□□ 1.78
COL3A1P02461 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC26.2■■□□□ 1.78
COL3A1P02461 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC26.2■■□□□ 1.78
COL3A1P02461 HLA-A-209ENST00000638375 975 ntBASIC26.2■■□□□ 1.78
COL3A1P02461 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL3A1P02461 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC26.2■■□□□ 1.78
COL3A1P02461 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC26.2■■□□□ 1.78
COL3A1P02461 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL3A1P02461 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL3A1P02461 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC26.19■■□□□ 1.78
COL3A1P02461 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC26.19■■□□□ 1.78
COL3A1P02461 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC26.19■■□□□ 1.78
COL3A1P02461 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC26.19■■□□□ 1.78
COL3A1P02461 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC26.19■■□□□ 1.78
COL3A1P02461 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC26.19■■□□□ 1.78
COL3A1P02461 AC073195.1-201ENST00000607241 877 ntBASIC26.19■■□□□ 1.78
COL3A1P02461 AL445675.2-201ENST00000620291 557 ntBASIC26.19■■□□□ 1.78
COL3A1P02461 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
COL3A1P02461 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL3A1P02461 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC26.19■■□□□ 1.78
COL3A1P02461 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.19■■□□□ 1.78
COL3A1P02461 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
COL3A1P02461 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms