Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC29.85■■■□□ 2.37
RAPGEF3O95398 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC29.85■■■□□ 2.37
RAPGEF3O95398 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
RAPGEF3O95398 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC29.85■■■□□ 2.37
RAPGEF3O95398 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC29.85■■■□□ 2.37
RAPGEF3O95398 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
RAPGEF3O95398 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RAPGEF3O95398 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC29.84■■■□□ 2.37
RAPGEF3O95398 TERT-206ENST00000508104 2486 ntTSL 5 BASIC29.84■■■□□ 2.37
RAPGEF3O95398 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC29.84■■■□□ 2.37
RAPGEF3O95398 GPALPP1-207ENST00000611650 899 ntBASIC29.84■■■□□ 2.37
RAPGEF3O95398 NPAP1P7-201ENST00000613027 823 ntBASIC29.84■■■□□ 2.37
RAPGEF3O95398 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RAPGEF3O95398 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC29.84■■■□□ 2.37
RAPGEF3O95398 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC29.83■■■□□ 2.37
RAPGEF3O95398 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.37
RAPGEF3O95398 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC29.83■■■□□ 2.37
RAPGEF3O95398 AC112907.2-201ENST00000448639 330 ntBASIC29.83■■■□□ 2.37
RAPGEF3O95398 SKP2-204ENST00000508514 821 ntTSL 3 BASIC29.83■■■□□ 2.37
RAPGEF3O95398 ZNF444P1-201ENST00000559497 298 ntBASIC29.83■■■□□ 2.37
RAPGEF3O95398 AC006538.3-201ENST00000612495 578 ntBASIC29.83■■■□□ 2.37
RAPGEF3O95398 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC29.83■■■□□ 2.37
RAPGEF3O95398 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RAPGEF3O95398 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC29.82■■■□□ 2.36
RAPGEF3O95398 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RAPGEF3O95398 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 BCL10-202ENST00000620248 774 ntTSL 5 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RAPGEF3O95398 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RAPGEF3O95398 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RAPGEF3O95398 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC29.82■■■□□ 2.36
RAPGEF3O95398 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 AL845331.1-201ENST00000424978 1190 ntBASIC29.81■■■□□ 2.36
RAPGEF3O95398 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC29.81■■■□□ 2.36
RAPGEF3O95398 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RAPGEF3O95398 GOLGA6L3-201ENST00000507199 1679 ntBASIC29.81■■■□□ 2.36
RAPGEF3O95398 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC29.8■■■□□ 2.36
RAPGEF3O95398 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RAPGEF3O95398 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RAPGEF3O95398 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RAPGEF3O95398 AL512604.3-201ENST00000569583 964 ntBASIC29.8■■■□□ 2.36
RAPGEF3O95398 AC023511.2-201ENST00000618803 211 ntBASIC29.8■■■□□ 2.36
RAPGEF3O95398 CR769767.2-201ENST00000622735 460 ntBASIC29.8■■■□□ 2.36
RAPGEF3O95398 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
RAPGEF3O95398 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 PARN-205ENST00000539279 1557 ntTSL 2 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 AC092119.3-201ENST00000612618 583 ntBASIC29.79■■■□□ 2.36
RAPGEF3O95398 AC004263.2-201ENST00000617183 678 ntBASIC29.79■■■□□ 2.36
RAPGEF3O95398 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC29.79■■■□□ 2.36
RAPGEF3O95398 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RAPGEF3O95398 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
RAPGEF3O95398 Z85996.1-201ENST00000494644 937 ntBASIC29.78■■■□□ 2.36
RAPGEF3O95398 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC29.78■■■□□ 2.36
RAPGEF3O95398 SDHD-206ENST00000528182 754 ntTSL 3 BASIC29.78■■■□□ 2.36
RAPGEF3O95398 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC29.78■■■□□ 2.36
RAPGEF3O95398 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
RAPGEF3O95398 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
RAPGEF3O95398 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms