Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB3O75112 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB3O75112 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB3O75112 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB3O75112 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB3O75112 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB3O75112 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
LDB3O75112 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 AC069544.1-201ENST00000609399 999 ntBASIC18.6■□□□□ 0.57
LDB3O75112 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB3O75112 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB3O75112 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB3O75112 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LDB3O75112 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB3O75112 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 AC116351.2-201ENST00000606540 1585 ntBASIC18.59■□□□□ 0.57
LDB3O75112 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB3O75112 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.59■□□□□ 0.57
LDB3O75112 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB3O75112 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB3O75112 AL121906.2-201ENST00000621597 723 ntBASIC18.59■□□□□ 0.57
LDB3O75112 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LDB3O75112 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LDB3O75112 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB3O75112 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LDB3O75112 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB3O75112 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.58■□□□□ 0.57
LDB3O75112 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LDB3O75112 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB3O75112 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LDB3O75112 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LDB3O75112 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.58■□□□□ 0.57
LDB3O75112 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
LDB3O75112 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.58■□□□□ 0.56
LDB3O75112 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.58■□□□□ 0.56
LDB3O75112 AC128676.1-201ENST00000454392 318 ntBASIC18.58■□□□□ 0.56
LDB3O75112 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
LDB3O75112 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.58■□□□□ 0.56
LDB3O75112 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.58■□□□□ 0.56
LDB3O75112 AC073648.6-201ENST00000641589 218 ntBASIC18.58■□□□□ 0.56
LDB3O75112 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.58■□□□□ 0.56
LDB3O75112 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.58■□□□□ 0.56
LDB3O75112 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.58■□□□□ 0.56
LDB3O75112 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB3O75112 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.57■□□□□ 0.56
LDB3O75112 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LDB3O75112 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.57■□□□□ 0.56
LDB3O75112 AP001271.2-201ENST00000624018 1556 ntBASIC18.57■□□□□ 0.56
LDB3O75112 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 ABHD17AP1-201ENST00000358206 933 ntBASIC18.57■□□□□ 0.56
LDB3O75112 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.57■□□□□ 0.56
LDB3O75112 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.57■□□□□ 0.56
LDB3O75112 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms