Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CASC19-205ENST00000641013 1411 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC105749.1-201ENST00000631338 2008 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC092725.2-201ENST00000567658 1389 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL139148.1-201ENST00000427122 680 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 RPS26P41-201ENST00000450370 284 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL356981.1-201ENST00000454879 684 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 RANP1-206ENST00000455094 651 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 PPATP2-201ENST00000605635 508 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 SRRM1P3-201ENST00000426911 2678 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC015977.1-201ENST00000418887 292 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL451136.1-201ENST00000435399 325 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC009220.1-201ENST00000451614 275 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 RPL35AP19-201ENST00000469425 329 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC090142.2-201ENST00000483263 416 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AC024558.1-201ENST00000505008 528 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 MIR4436B2-201ENST00000581415 91 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 MIR4436B1-201ENST00000583272 91 ntBASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
SHANK3Q9BYB0 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 TNPO1P2-201ENST00000426249 2665 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 MRE11P1-201ENST00000464884 2127 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 RNA5SP131-201ENST00000365452 119 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 MIR1286-201ENST00000408112 78 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 EEF1B2P5-201ENST00000444820 548 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 LRRC37A14P-201ENST00000452297 462 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 HIGD1AP14-201ENST00000507617 282 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AP004607.2-201ENST00000533949 322 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC145423.1-201ENST00000605712 336 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC005840.5-201ENST00000619166 599 ntBASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
SHANK3Q9BYB0 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 AC016397.1-201ENST00000412463 242 ntBASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 AC009963.2-201ENST00000453431 138 ntBASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 GYG1P1-201ENST00000460864 698 ntBASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 AC009120.1-201ENST00000493458 473 ntBASIC7.67□□□□□ -1.18
SHANK3Q9BYB0 PRELID3BP5-201ENST00000508612 460 ntBASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms