Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TPRX1P1-201ENST00000557620 319 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 MTND2P13-201ENST00000577438 1039 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC067838.1-201ENST00000606064 577 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 AC096921.2-201ENST00000561507 1916 ntBASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CHMP4AQ9BY43 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 SAMM50P1-201ENST00000455403 1399 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AC105235.1-201ENST00000623208 1816 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 RAB5CP1-201ENST00000395972 580 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 H3F3AP5-201ENST00000475267 429 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 GUSBP9-201ENST00000510138 584 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AC026782.2-201ENST00000510845 636 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 RN7SKP183-201ENST00000517169 324 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 ODF1-202ENST00000518835 368 ntTSL 3 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AC002519.2-203ENST00000567043 837 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 MIR7109-201ENST00000613748 65 ntBASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 FGG-205ENST00000407946 1636 ntTSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CHMP4AQ9BY43 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC090181.3-201ENST00000624777 1514 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC092070.2-203ENST00000598377 3644 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AL353625.1-202ENST00000366273 571 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RN7SKP281-201ENST00000410472 352 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RAB28P3-201ENST00000448325 597 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 MTND6P32-201ENST00000457611 483 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RN7SL552P-201ENST00000462094 276 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RPL12P31-201ENST00000478433 450 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC092824.1-201ENST00000483524 576 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC113367.2-201ENST00000505749 160 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC108103.1-201ENST00000511286 446 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RN7SKP70-201ENST00000516655 271 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC024405.1-201ENST00000532521 1042 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 PLEKHA3P1-201ENST00000598554 894 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AP001052.1-201ENST00000626421 99 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 CASC19-246ENST00000641625 1606 ntBASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC8.24□□□□□ -1.09
CHMP4AQ9BY43 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms