Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 AL450226.2-201ENST00000622913 439 ntBASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC3Q9BQI4 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 PARP4P1-201ENST00000435945 2337 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP110-201ENST00000362638 115 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 LYPLA1P3-201ENST00000402650 695 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 SETP20-201ENST00000457046 852 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RN7SL326P-201ENST00000477493 296 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 NPM1P27-201ENST00000502784 830 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AL158068.1-201ENST00000506116 616 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RN7SKP238-201ENST00000516483 249 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 IGHV1-14-201ENST00000523391 241 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AC008521.2-201ENST00000591021 259 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AP001823.1-201ENST00000604056 1003 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AC129778.1-202ENST00000623812 261 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AL591379.1-207ENST00000635982 261 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC3Q9BQI4 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 UGT2B27P-201ENST00000505092 1620 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC011455.2-201ENST00000599320 3336 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 NEK2P2-201ENST00000438441 1338 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP510-201ENST00000364697 99 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AL353662.1-201ENST00000439099 327 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AL136455.1-201ENST00000441083 1240 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 HIGD1AP16-201ENST00000450986 258 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 HLA-DPA3-207ENST00000454398 229 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 RPL34P33-201ENST00000486062 334 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 MTND6P8-201ENST00000503471 522 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC006499.4-201ENST00000510947 694 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms