Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC092070.2-203ENST00000598377 3644 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL355834.1-201ENST00000556602 3965 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC119674.1-213ENST00000641177 1386 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 RPL11P4-201ENST00000332269 436 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 MIR133A2-201ENST00000347538 102 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 LCN1P2-201ENST00000372030 223 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AL157702.1-201ENST00000398764 426 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 CYP4F30P-202ENST00000420048 405 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 RN7SL369P-201ENST00000477138 299 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 RPL12P31-201ENST00000478433 450 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC044810.1-201ENST00000480271 711 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC010343.2-201ENST00000510162 224 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC097486.1-201ENST00000515331 210 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 SNORA74.1-201ENST00000516320 180 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC009729.1-201ENST00000548873 1133 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 SNORA74.4-201ENST00000607595 199 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC012676.3-201ENST00000614983 479 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CASC19-246ENST00000641625 1606 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 LINC01613-201ENST00000561476 2780 ntBASIC5.54□□□□□ -1.52
SKA3Q8IX90 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
SKA3Q8IX90 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
SKA3Q8IX90 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 SSXP3-201ENST00000442971 1300 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC110373.1-201ENST00000505994 3505 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 PSMA6P1-201ENST00000400275 741 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 PEX12P1-201ENST00000400284 1048 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 MTND2P12-201ENST00000417560 1252 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC117434.1-201ENST00000419971 836 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 GUSBP9-201ENST00000510138 584 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 RNA5SP206-201ENST00000516703 121 ntBASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SKA3Q8IX90 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.53□□□□□ -1.52
SKA3Q8IX90 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms