Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC7.52□□□□□ -1.21
SOX4Q06945 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
SOX4Q06945 RNA5SP152-201ENST00000365184 110 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 RNU6ATAC25P-201ENST00000408798 117 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 TATDN1P1-201ENST00000414123 891 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 ELOCP9-201ENST00000418624 239 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 MTCO1P45-201ENST00000431457 267 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.52□□□□□ -1.21
SOX4Q06945 MRPL35P4-201ENST00000453682 566 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AL359385.1-201ENST00000456509 365 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 TRBV8-1-201ENST00000481590 279 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 RN7SL350P-201ENST00000492591 299 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 RN7SL143P-201ENST00000496780 297 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 OR5H7P-201ENST00000514084 930 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 MTND4LP26-201ENST00000518144 282 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 AP000916.1-201ENST00000533869 835 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 PPIAP6-201ENST00000557078 499 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 ACTR3BP3-201ENST00000565577 979 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC010287.1-201ENST00000566916 357 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC006362.1-201ENST00000567392 174 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 PPIAP14-201ENST00000577627 496 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 MIR3135A-201ENST00000578460 77 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC091135.1-201ENST00000585943 307 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC008759.1-201ENST00000589783 983 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC7.52□□□□□ -1.21
SOX4Q06945 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 MTND3P19-201ENST00000603825 345 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AC131235.4-201ENST00000609288 620 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AL137000.1-201ENST00000610528 1244 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 U6atac.1-201ENST00000616025 117 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 AL590240.3-201ENST00000621416 943 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.52□□□□□ -1.21
SOX4Q06945 AL049541.2-201ENST00000626377 555 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
SOX4Q06945 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
SOX4Q06945 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 AC132219.2-201ENST00000624416 2327 ntBASIC7.52□□□□□ -1.21
SOX4Q06945 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC7.52□□□□□ -1.21
SOX4Q06945 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.52□□□□□ -1.21
SOX4Q06945 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SOX4Q06945 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SOX4Q06945 RNU6-1017P-201ENST00000363613 106 ntBASIC7.51□□□□□ -1.21
SOX4Q06945 RNA5SP172-201ENST00000365061 118 ntBASIC7.51□□□□□ -1.21
SOX4Q06945 AC092634.1-201ENST00000366505 199 ntBASIC7.51□□□□□ -1.21
SOX4Q06945 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
SOX4Q06945 Y_RNA.472-201ENST00000384322 102 ntBASIC7.51□□□□□ -1.21
SOX4Q06945 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms