Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 CR788268.1-201ENST00000603931 1809 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 AC005618.1-201ENST00000606901 3148 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
HOXC9P31274 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC8.01□□□□□ -1.13
HOXC9P31274 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 RPS7P3-201ENST00000443360 580 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 AL022237.1-201ENST00000446663 358 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 AC027308.1-201ENST00000517993 110 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 KCTD9P4-201ENST00000526766 1166 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 HMGN2P36-201ENST00000529541 409 ntBASIC8.01□□□□□ -1.13
HOXC9P31274 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC8.01□□□□□ -1.13
HOXC9P31274 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC8.01□□□□□ -1.13
HOXC9P31274 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC8.01□□□□□ -1.13
HOXC9P31274 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
HOXC9P31274 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC8.01□□□□□ -1.13
HOXC9P31274 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC8□□□□□ -1.13
HOXC9P31274 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 RNA5SP394-201ENST00000364216 119 ntBASIC8□□□□□ -1.13
HOXC9P31274 MIR143-201ENST00000385300 106 ntBASIC8□□□□□ -1.13
HOXC9P31274 RPL36P18-201ENST00000419316 318 ntBASIC8□□□□□ -1.13
HOXC9P31274 MARK2P12-201ENST00000420129 585 ntBASIC8□□□□□ -1.13
HOXC9P31274 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC8□□□□□ -1.13
HOXC9P31274 AC126120.1-201ENST00000431082 470 ntBASIC8□□□□□ -1.13
HOXC9P31274 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC8□□□□□ -1.13
HOXC9P31274 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC8□□□□□ -1.13
HOXC9P31274 AC011742.2-201ENST00000443818 352 ntBASIC8□□□□□ -1.13
HOXC9P31274 RPL23AP60-201ENST00000450011 454 ntBASIC8□□□□□ -1.13
HOXC9P31274 AC103563.5-201ENST00000455643 364 ntBASIC8□□□□□ -1.13
HOXC9P31274 AC093166.4-201ENST00000457867 318 ntBASIC8□□□□□ -1.13
HOXC9P31274 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 NENFP3-201ENST00000503735 313 ntBASIC8□□□□□ -1.13
HOXC9P31274 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC8□□□□□ -1.13
HOXC9P31274 IGLV3-30-201ENST00000524362 298 ntBASIC8□□□□□ -1.13
HOXC9P31274 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC8□□□□□ -1.13
HOXC9P31274 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC8□□□□□ -1.13
HOXC9P31274 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC8□□□□□ -1.13
HOXC9P31274 AP001496.3-201ENST00000580230 913 ntBASIC8□□□□□ -1.13
HOXC9P31274 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC8□□□□□ -1.13
HOXC9P31274 AC104695.2-201ENST00000605056 775 ntBASIC8□□□□□ -1.13
HOXC9P31274 FAM27E4-201ENST00000605259 342 ntBASIC8□□□□□ -1.13
HOXC9P31274 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC8□□□□□ -1.13
HOXC9P31274 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC8□□□□□ -1.13
HOXC9P31274 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC8□□□□□ -1.13
HOXC9P31274 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
HOXC9P31274 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8□□□□□ -1.13
HOXC9P31274 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC8□□□□□ -1.13
HOXC9P31274 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC8□□□□□ -1.13
HOXC9P31274 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
HOXC9P31274 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
HOXC9P31274 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
HOXC9P31274 RPS2P45-201ENST00000469997 2057 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.99□□□□□ -1.13
HOXC9P31274 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
HOXC9P31274 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC7.99□□□□□ -1.13
HOXC9P31274 HMGB1P20-201ENST00000402555 677 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.99□□□□□ -1.13
HOXC9P31274 MRPL53P1-201ENST00000414323 319 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 PTCD2P2-201ENST00000415579 1095 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 RPL34P3-201ENST00000421454 338 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC002504.1-201ENST00000438281 691 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC7.99□□□□□ -1.13
HOXC9P31274 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.99□□□□□ -1.13
HOXC9P31274 RPS23P6-201ENST00000466136 431 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC026254.2-201ENST00000475295 371 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC090142.2-201ENST00000483263 416 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 RN7SL629P-201ENST00000489622 285 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.99□□□□□ -1.13
HOXC9P31274 AC074087.1-201ENST00000512059 724 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 IGKV2-19-201ENST00000518132 283 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC007225.2-201ENST00000562529 256 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC7.99□□□□□ -1.13
HOXC9P31274 AL589674.2-201ENST00000604304 337 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AC024589.2-201ENST00000605642 1294 ntBASIC7.99□□□□□ -1.13
HOXC9P31274 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.99□□□□□ -1.13
HOXC9P31274 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HOXC9P31274 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.99□□□□□ -1.13
HOXC9P31274 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
HOXC9P31274 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.98□□□□□ -1.13
HOXC9P31274 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.98□□□□□ -1.13
HOXC9P31274 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
HOXC9P31274 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms