Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC024651.2-201ENST00000562480 2098 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 AC007485.2-201ENST00000623493 1667 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXD4P09016 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXD4P09016 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 SNORD16-201ENST00000362803 99 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 RNU1-46P-201ENST00000384425 164 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXD4P09016 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXD4P09016 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 CYCSP52-201ENST00000422857 310 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 AC092865.3-201ENST00000425390 1026 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXD4P09016 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 AL645936.1-201ENST00000441979 518 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 COX4I1P2-201ENST00000447446 547 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 OR52I1-201ENST00000450052 1050 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 RARRES2P3-201ENST00000457739 473 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 AC009963.3-201ENST00000458090 486 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 GM2AP2-201ENST00000491764 562 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 SNX18P25-201ENST00000510539 758 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.78□□□□□ -1.48
HOXD4P09016 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.78□□□□□ -1.48
HOXD4P09016 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 AC004232.2-201ENST00000574245 821 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXD4P09016 AC004836.1-201ENST00000623032 634 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC5.78□□□□□ -1.48
HOXD4P09016 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 AL357140.4-201ENST00000636827 412 ntBASIC5.78□□□□□ -1.48
HOXD4P09016 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXD4P09016 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HOXD4P09016 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
HOXD4P09016 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.78□□□□□ -1.48
HOXD4P09016 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.48
HOXD4P09016 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.48
HOXD4P09016 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 AL731556.1-201ENST00000394628 3711 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 TATDN2P3-201ENST00000452855 3665 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 UGT2B24P-201ENST00000514441 1597 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 RPL11P4-201ENST00000332269 436 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 AC003045.1-201ENST00000398779 713 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 SNORA77.2-201ENST00000408571 112 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 AL713922.1-201ENST00000416477 747 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 AC117434.1-201ENST00000419971 836 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 OSTCP4-201ENST00000424397 449 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 AMYP1-201ENST00000440059 1023 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.77□□□□□ -1.49
HOXD4P09016 RN7SL561P-201ENST00000488553 281 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 IGHV4-55-201ENST00000520889 368 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXD4P09016 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.77□□□□□ -1.49
HOXD4P09016 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms