Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 U3.2-201ENST00000362981 210 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 AP000534.2-201ENST00000412729 568 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 OR6E1P-201ENST00000414424 923 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 RPL36P18-201ENST00000419316 318 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AURKAPS1-201ENST00000451805 1212 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.44□□□□□ -1.38
COL4A4P53420 RN7SL329P-201ENST00000467740 299 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 OR7E157P-201ENST00000494376 911 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AC231760.1-201ENST00000498002 260 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AC109481.1-201ENST00000509173 282 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 BX510359.5-201ENST00000515651 304 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 RNA5SP92-201ENST00000516437 110 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 WBP1LP3-201ENST00000523033 208 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.44□□□□□ -1.38
COL4A4P53420 AC027667.1-201ENST00000545814 304 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 AC037198.3-201ENST00000616754 526 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 LINC01963-201ENST00000562038 3148 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL4A4P53420 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 AOX3P-204ENST00000491025 2107 ntBASIC6.44□□□□□ -1.38
COL4A4P53420 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 RNA5SP394-201ENST00000364216 119 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 CFL1P1-202ENST00000432948 411 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.43□□□□□ -1.38
COL4A4P53420 AL022319.1-201ENST00000458183 1167 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 RNA5SP400-201ENST00000517155 111 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 PCNAP4-201ENST00000532690 730 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.43□□□□□ -1.38
COL4A4P53420 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.43□□□□□ -1.38
COL4A4P53420 AL445222.1-201ENST00000607259 628 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 AC022919.1-201ENST00000624979 626 ntBASIC6.43□□□□□ -1.38
COL4A4P53420 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.43□□□□□ -1.38
COL4A4P53420 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL4A4P53420 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
COL4A4P53420 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.43□□□□□ -1.38
COL4A4P53420 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL4A4P53420 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.43□□□□□ -1.38
COL4A4P53420 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL4A4P53420 RPS27P18-201ENST00000431701 247 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 OR13K1P-201ENST00000444577 975 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC005532.2-201ENST00000467154 373 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL4A4P53420 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.42□□□□□ -1.38
COL4A4P53420 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.42□□□□□ -1.38
COL4A4P53420 OR4A46P-201ENST00000527255 933 ntBASIC6.42□□□□□ -1.38
COL4A4P53420 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms