Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.79□□□□□ -1.32
NEK3P51956 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
NEK3P51956 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
NEK3P51956 AC140479.2-201ENST00000421567 3130 ntBASIC6.79□□□□□ -1.32
NEK3P51956 AKAP17BP-201ENST00000431706 2719 ntBASIC6.78□□□□□ -1.32
NEK3P51956 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 RNA5SP321-201ENST00000362722 111 ntBASIC6.78□□□□□ -1.32
NEK3P51956 SNORA70.3-201ENST00000365075 132 ntBASIC6.78□□□□□ -1.32
NEK3P51956 RNU1-55P-201ENST00000365510 158 ntBASIC6.78□□□□□ -1.32
NEK3P51956 RNU6-40P-201ENST00000384254 107 ntBASIC6.78□□□□□ -1.32
NEK3P51956 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.78□□□□□ -1.32
NEK3P51956 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC6.78□□□□□ -1.32
NEK3P51956 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 AC044810.1-201ENST00000480271 711 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AC015524.1-201ENST00000491585 472 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AC138517.1-201ENST00000515724 568 ntBASIC6.78□□□□□ -1.32
NEK3P51956 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 AP003049.1-201ENST00000529418 457 ntBASIC6.78□□□□□ -1.32
NEK3P51956 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
NEK3P51956 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 AC005519.1-201ENST00000554490 601 ntBASIC6.78□□□□□ -1.32
NEK3P51956 HNRNPA1P74-201ENST00000560782 835 ntBASIC6.78□□□□□ -1.32
NEK3P51956 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.78□□□□□ -1.32
NEK3P51956 ANP32BP1-202ENST00000568553 737 ntBASIC6.78□□□□□ -1.32
NEK3P51956 MIR212-201ENST00000586026 110 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.78□□□□□ -1.32
NEK3P51956 AC091193.1-201ENST00000604640 448 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AL355802.4-201ENST00000607635 548 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AC135803.1-201ENST00000608748 565 ntBASIC6.78□□□□□ -1.32
NEK3P51956 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.78□□□□□ -1.32
NEK3P51956 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 AC005899.7-201ENST00000618199 588 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AL035425.4-201ENST00000624509 1063 ntBASIC6.78□□□□□ -1.32
NEK3P51956 AC097372.4-201ENST00000625025 466 ntBASIC6.78□□□□□ -1.32
NEK3P51956 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 RACGAP1P-201ENST00000550663 1879 ntBASIC6.78□□□□□ -1.32
NEK3P51956 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.78□□□□□ -1.32
NEK3P51956 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 AC217777.1-201ENST00000570034 1471 ntBASIC6.78□□□□□ -1.32
NEK3P51956 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
NEK3P51956 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
NEK3P51956 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
NEK3P51956 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
NEK3P51956 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.77□□□□□ -1.32
NEK3P51956 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.77□□□□□ -1.33
NEK3P51956 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.77□□□□□ -1.33
NEK3P51956 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NEK3P51956 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.77□□□□□ -1.33
NEK3P51956 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NEK3P51956 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
NEK3P51956 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NEK3P51956 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
NEK3P51956 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
NEK3P51956 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 UBTFL2-201ENST00000411859 1191 ntBASIC6.77□□□□□ -1.33
NEK3P51956 RPS21P8-201ENST00000413365 247 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AL357078.2-201ENST00000416486 427 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.77□□□□□ -1.33
NEK3P51956 GTF3AP6-201ENST00000432585 986 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AC096632.2-201ENST00000438139 1239 ntBASIC6.77□□□□□ -1.33
NEK3P51956 GTF2IP14-201ENST00000441415 586 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.77□□□□□ -1.33
NEK3P51956 AC099670.1-201ENST00000455141 783 ntBASIC6.77□□□□□ -1.33
NEK3P51956 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 YRDCP3-201ENST00000456507 480 ntBASIC6.77□□□□□ -1.33
NEK3P51956 CABYRP1-201ENST00000465493 1045 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.77□□□□□ -1.33
NEK3P51956 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 AC025768.1-201ENST00000510057 267 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AL390198.2-201ENST00000510553 222 ntBASIC6.77□□□□□ -1.33
NEK3P51956 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC6.77□□□□□ -1.33
NEK3P51956 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.77□□□□□ -1.33
NEK3P51956 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.77□□□□□ -1.33
NEK3P51956 CKS1BP1-201ENST00000555221 240 ntBASIC6.77□□□□□ -1.33
NEK3P51956 MIR3157-201ENST00000578688 85 ntBASIC6.77□□□□□ -1.33
NEK3P51956 AC138207.8-204ENST00000579588 527 ntBASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms