Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.26□□□□□ -1.25
BRCA1P38398 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 RNU11-6P-201ENST00000391127 133 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 HMGA1P8-201ENST00000414130 321 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 VDAC1P2-201ENST00000423609 850 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 VDAC1P6-201ENST00000430062 855 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC7.26□□□□□ -1.25
BRCA1P38398 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 HIGD1AP8-201ENST00000453927 274 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.26□□□□□ -1.25
BRCA1P38398 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 AC119403.2-201ENST00000590960 598 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.26□□□□□ -1.25
BRCA1P38398 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
BRCA1P38398 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 AP002370.1-201ENST00000528055 1602 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC7.26□□□□□ -1.25
BRCA1P38398 AL359976.1-201ENST00000418655 3528 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 RN7SKP166-201ENST00000410812 305 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.26□□□□□ -1.25
BRCA1P38398 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.26□□□□□ -1.25
BRCA1P38398 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 AC147055.3-201ENST00000510547 851 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 GSTP1P1-201ENST00000548078 319 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.26□□□□□ -1.25
BRCA1P38398 AC126915.2-201ENST00000610957 190 ntBASIC7.26□□□□□ -1.25
BRCA1P38398 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.26□□□□□ -1.25
BRCA1P38398 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 AC007938.2-201ENST00000604666 2634 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 MIR141-201ENST00000384975 95 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 SNORA11-201ENST00000408789 128 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 AZGP1P2-201ENST00000454506 345 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 AL035090.1-201ENST00000454835 332 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.25□□□□□ -1.25
BRCA1P38398 AC073610.1-201ENST00000489971 396 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 IGLV2-34-201ENST00000490007 283 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 RNA5SP400-201ENST00000517155 111 ntBASIC7.25□□□□□ -1.25
BRCA1P38398 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.25□□□□□ -1.25
BRCA1P38398 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
BRCA1P38398 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.25□□□□□ -1.25
BRCA1P38398 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.25□□□□□ -1.25
BRCA1P38398 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 MFSD4BP1-201ENST00000513330 1552 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.24□□□□□ -1.25
BRCA1P38398 AL450023.1-201ENST00000450868 751 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 RN7SL591P-201ENST00000496150 292 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 RN7SKP66-201ENST00000516681 231 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms