Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC7.3□□□□□ -1.24
SMARCA1P28370 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 MTND6P8-201ENST00000503471 522 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AC018797.1-201ENST00000510791 255 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC7.3□□□□□ -1.24
SMARCA1P28370 AL683813.2-201ENST00000605245 502 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 CASC19-274ENST00000642018 970 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 DOCK11P1-201ENST00000553480 5932 ntBASIC7.3□□□□□ -1.24
SMARCA1P28370 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMARCA1P28370 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC7.3□□□□□ -1.24
SMARCA1P28370 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.29□□□□□ -1.24
SMARCA1P28370 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
SMARCA1P28370 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 TINAG-203ENST00000370869 782 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AL035422.1-201ENST00000414193 397 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 UBE2V1P14-201ENST00000415815 558 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 IGLV3-4-201ENST00000432300 244 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 Z85994.2-201ENST00000434327 452 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AL590762.3-201ENST00000436372 640 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 OR13K1P-201ENST00000444577 975 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AL590004.3-202ENST00000445883 451 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 VPS25P1-201ENST00000455691 508 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC005017.1-201ENST00000482002 490 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 OR4A46P-201ENST00000527255 933 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AC002519.2-203ENST00000567043 837 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 MIR4701-201ENST00000583094 63 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC107993.1-201ENST00000591343 684 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AL049840.6-201ENST00000604583 345 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC005828.7-201ENST00000607331 556 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC015802.5-201ENST00000607478 399 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC7.29□□□□□ -1.24
SMARCA1P28370 AC253576.2-201ENST00000618815 580 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 AC020763.5-201ENST00000623298 430 ntBASIC7.29□□□□□ -1.24
SMARCA1P28370 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
SMARCA1P28370 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
SMARCA1P28370 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.29□□□□□ -1.24
SMARCA1P28370 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.29□□□□□ -1.24
SMARCA1P28370 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMARCA1P28370 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
SMARCA1P28370 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 ODF3-202ENST00000342593 386 ntTSL 5 BASIC7.28□□□□□ -1.24
SMARCA1P28370 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SMARCA1P28370 RBBP4P5-201ENST00000398583 1266 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 YWHAZP6-201ENST00000399764 738 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 RN7SKP161-201ENST00000411110 305 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 RNU2-18P-201ENST00000411224 162 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 GAPDHP59-201ENST00000435908 267 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AL645936.1-201ENST00000441979 518 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AC009237.1-201ENST00000442127 744 ntBASIC7.28□□□□□ -1.24
SMARCA1P28370 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC7.28□□□□□ -1.24
SMARCA1P28370 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms