Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP001554.1-201ENST00000604533 376 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AL592295.2-201ENST00000612578 206 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 DRICH1-202ENST00000614553 687 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 AL121985.2-201ENST00000621192 555 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC120349.2-201ENST00000625002 298 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL8A1P27658 ZSCAN31-202ENST00000396838 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
COL8A1P27658 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AL353583.1-201ENST00000624195 1855 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 MAPK10-312ENST00000641391 2488 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
COL8A1P27658 MAPK10-378ENST00000642009 2463 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
COL8A1P27658 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 MAPK10-248ENST00000640490 2715 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 CLDN16-201ENST00000264734 3273 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 NELL2-202ENST00000395487 3203 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 VIT-202ENST00000379242 2810 ntAPPRIS P3 TSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 SIRT5-205ENST00000606117 3922 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 SAMM50P1-201ENST00000455403 1399 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 CYB5D1-201ENST00000332439 3509 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 FBXO38-201ENST00000296701 3680 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 LINC01291-201ENST00000377469 3662 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 C8orf44-201ENST00000390159 1817 ntAPPRIS P2 TSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 AL034397.3-202ENST00000621933 1815 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 XRCC6P4-201ENST00000518193 2067 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 MAPK10-228ENST00000512689 2583 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 RPL24P4-201ENST00000326586 421 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 OR7A17-201ENST00000327462 1127 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
COL8A1P27658 Y_RNA.18-201ENST00000362461 102 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 VTRNA1-2-201ENST00000365241 89 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 RNU6-331P-201ENST00000384724 107 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 PKMP3-201ENST00000405497 715 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 RNU2-47P-201ENST00000410649 186 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 RPL24P2-201ENST00000421023 475 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 ARAFP1-201ENST00000422172 605 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC073464.1-201ENST00000429823 534 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 LINC00328-2P-201ENST00000436585 219 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AL592437.1-201ENST00000443781 492 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 DDX39BP2-208ENST00000453923 258 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 EIF3LP2-201ENST00000457262 807 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC022730.2-201ENST00000465359 452 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC007547.2-201ENST00000468802 360 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 WBP1LP4-201ENST00000505043 344 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 OR7E83P-201ENST00000511021 970 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 MCC-209ENST00000515367 3844 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC100849.1-202ENST00000517949 562 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 OR5AN2P-201ENST00000534535 896 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 THAP2-202ENST00000547843 672 ntTSL 2 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 AL157687.1-201ENST00000554853 619 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 SIGLEC31P-201ENST00000594237 551 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC7.09□□□□□ -1.27
COL8A1P27658 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 AC012065.4-201ENST00000602445 679 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 7SK.7-201ENST00000603504 247 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC087283.1-201ENST00000604029 1074 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC007621.1-201ENST00000604544 437 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC073137.1-201ENST00000605636 634 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC7.09□□□□□ -1.27
COL8A1P27658 AL590282.1-201ENST00000610379 1136 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 MIR6070-201ENST00000613967 103 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC022509.4-201ENST00000621404 572 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AL359880.1-201ENST00000621879 266 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 YWHAEP7-203ENST00000622054 312 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AL353898.2-201ENST00000623000 255 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 AC005858.4-201ENST00000623191 700 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 TTK-211ENST00000627129 240 ntTSL 5 BASIC7.09□□□□□ -1.27
COL8A1P27658 ATP5A1P3-201ENST00000573189 1507 ntBASIC7.09□□□□□ -1.27
COL8A1P27658 PHLDB2-207ENST00000477695 5813 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 WDR44-203ENST00000371825 4029 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL8A1P27658 VSIG1-202ENST00000415430 3236 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms