Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AL132875.1-201ENST00000403623 949 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 LSM5-203ENST00000409782 649 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC245096.1-201ENST00000413104 546 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC245060.4-201ENST00000413293 1121 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 RPL34P3-201ENST00000421454 338 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 GAPDHP58-201ENST00000438477 1006 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC073909.1-201ENST00000447112 999 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC092967.1-201ENST00000449016 481 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 OXSM-209ENST00000626005 309 ntTSL 3 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 JPX-212ENST00000639185 9658 ntTSL 5 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 AL121835.1-201ENST00000404250 354 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 NPM1P4-201ENST00000414095 812 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 TRIM60P16-201ENST00000444048 694 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 SNORA70.20-201ENST00000516848 126 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 AC084337.1-201ENST00000524809 686 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 RPS2P45-201ENST00000469997 2057 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 MAPK10-323ENST00000641493 3207 ntBASIC11.74□□□□□ -0.53
SHROOM4Q9ULL8 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 ZNF969P-201ENST00000510345 2341 ntBASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 BPHL-201ENST00000380368 797 ntTSL 5 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 BX119321.1-201ENST00000428912 797 ntBASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 GAS5-218ENST00000448718 565 ntTSL 2 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 SAMMSON-227ENST00000642114 1199 ntBASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC11.73□□□□□ -0.53
SHROOM4Q9ULL8 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 RNU6-171P-201ENST00000384354 107 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AL445238.1-204ENST00000400311 463 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AL122020.1-201ENST00000472287 459 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 IGLV2-28-201ENST00000520681 304 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 GNG2-208ENST00000554875 430 ntTSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AC013731.1-201ENST00000604340 883 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AL445649.1-201ENST00000615941 691 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms