Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.8□□□□□ -1.16
COL18A1P39060 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 TNPO1P2-201ENST00000426249 2665 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 GAPDHP58-201ENST00000438477 1006 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.8□□□□□ -1.16
COL18A1P39060 AC019185.1-201ENST00000442718 389 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AC004129.2-201ENST00000457229 287 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AC100832.1-201ENST00000471945 383 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AL355032.1-201ENST00000472981 438 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 RN7SL583P-201ENST00000475692 287 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AOX3P-204ENST00000491025 2107 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
COL18A1P39060 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.8□□□□□ -1.16
COL18A1P39060 GARSP1-201ENST00000570895 719 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 AL139099.4-201ENST00000614802 114 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 TCL6_3.1-201ENST00000619064 137 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.8□□□□□ -1.16
COL18A1P39060 AC011504.1-201ENST00000623331 4103 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
COL18A1P39060 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL18A1P39060 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
COL18A1P39060 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC7.8□□□□□ -1.16
COL18A1P39060 AC087516.1-201ENST00000561236 2428 ntBASIC7.8□□□□□ -1.16
COL18A1P39060 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 AL450023.1-201ENST00000450868 751 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC139365.2-201ENST00000517972 253 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 PPATP2-201ENST00000605635 508 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AL512329.2-201ENST00000607350 548 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC037198.3-201ENST00000616754 526 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC021766.1-201ENST00000624404 741 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.79□□□□□ -1.16
COL18A1P39060 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 RNA5SP30-201ENST00000365552 115 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 Y_RNA.625-201ENST00000411256 107 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AL357752.1-201ENST00000412817 349 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AL133173.1-201ENST00000423458 397 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 BZW1P1-201ENST00000454901 1240 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 RPL38P3-201ENST00000484463 213 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC253576.1-201ENST00000511645 1156 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 AC021146.10-201ENST00000515628 706 ntBASIC7.79□□□□□ -1.16
COL18A1P39060 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL18A1P39060 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.79□□□□□ -1.16
COL18A1P39060 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC7.79□□□□□ -1.16
COL18A1P39060 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL18A1P39060 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.78□□□□□ -1.16
COL18A1P39060 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.78□□□□□ -1.16
COL18A1P39060 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC7.78□□□□□ -1.16
COL18A1P39060 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.78□□□□□ -1.16
COL18A1P39060 AC245047.2-201ENST00000441060 530 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.78□□□□□ -1.16
COL18A1P39060 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 OR5M14P-201ENST00000506803 618 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 AC092593.2-201ENST00000513866 913 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 IGLV2-28-201ENST00000520681 304 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms