Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 AC009097.3-201ENST00000563557 1018 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC133569.1-201ENST00000564327 373 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 AC023825.1-201ENST00000566704 1030 ntBASIC6.42□□□□□ -1.38
MSX2P35548 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 AGGF1P6-201ENST00000569213 976 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC010547.7-201ENST00000570323 333 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 RN7SL697P-201ENST00000582484 299 ntBASIC6.42□□□□□ -1.38
MSX2P35548 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 RDM1-219ENST00000615378 542 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 AP005212.3-201ENST00000619964 528 ntBASIC6.42□□□□□ -1.38
MSX2P35548 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 AL157831.2-201ENST00000564681 3095 ntBASIC6.42□□□□□ -1.38
MSX2P35548 CYP3A43-202ENST00000312017 1349 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 WFDC8-201ENST00000289953 1069 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 SNORA51.7-201ENST00000384171 134 ntBASIC6.41□□□□□ -1.38
MSX2P35548 SNORD15A-201ENST00000384214 148 ntBASIC6.41□□□□□ -1.38
MSX2P35548 MIR152-201ENST00000385212 87 ntBASIC6.41□□□□□ -1.38
MSX2P35548 RNU6-298P-201ENST00000390888 96 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 RPL22P18-201ENST00000417197 377 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AC241520.1-201ENST00000422654 1099 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 USP9YP11-201ENST00000427537 717 ntBASIC6.41□□□□□ -1.38
MSX2P35548 SLC25A24P1-202ENST00000434803 1220 ntBASIC6.41□□□□□ -1.38
MSX2P35548 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC006326.1-201ENST00000445465 787 ntBASIC6.41□□□□□ -1.38
MSX2P35548 GTF2F2P2-201ENST00000445825 721 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 OR52I1-201ENST00000450052 1050 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL591379.2-201ENST00000450223 397 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.41□□□□□ -1.38
MSX2P35548 AC018892.2-201ENST00000457656 693 ntBASIC6.41□□□□□ -1.38
MSX2P35548 RPL5P12-201ENST00000477071 851 ntBASIC6.41□□□□□ -1.38
MSX2P35548 RN7SL338P-201ENST00000481467 293 ntBASIC6.41□□□□□ -1.38
MSX2P35548 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC107956.2-201ENST00000496042 454 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC117383.2-201ENST00000514722 322 ntBASIC6.41□□□□□ -1.38
MSX2P35548 RNU6-491P-201ENST00000516099 110 ntBASIC6.41□□□□□ -1.38
MSX2P35548 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 SUMO2P19-201ENST00000518920 295 ntBASIC6.41□□□□□ -1.38
MSX2P35548 IGHV3-57-201ENST00000520143 280 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 CASP1P2-201ENST00000526830 1258 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC6.41□□□□□ -1.38
MSX2P35548 AC011509.2-201ENST00000592263 627 ntTSL 3 BASIC6.41□□□□□ -1.38
MSX2P35548 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC6.41□□□□□ -1.38
MSX2P35548 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AC010620.1-201ENST00000601088 1102 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL022067.1-201ENST00000602426 454 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AL109936.2-201ENST00000605350 650 ntBASIC6.41□□□□□ -1.38
MSX2P35548 AC097467.4-201ENST00000605504 141 ntBASIC6.41□□□□□ -1.38
MSX2P35548 CT45A8-202ENST00000611660 1008 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSX2P35548 CT45A2-202ENST00000612907 1008 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms