Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC091959.2-201ENST00000477363 321 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC008629.3-201ENST00000505786 586 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC091839.1-201ENST00000513087 269 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 RNF185-AS1-201ENST00000526089 353 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC117498.2-202ENST00000549864 473 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 CBX3P5-201ENST00000552017 521 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 SEPT7P9-203ENST00000604116 343 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 MIR6780B-201ENST00000610307 79 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AL132765.2-201ENST00000610812 351 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC027807.2-201ENST00000616099 408 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AL133370.2-201ENST00000619934 439 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC241585.4-201ENST00000640951 686 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 MYH2-204ENST00000532183 2528 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 UACA-203ENST00000539319 4026 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 SLIT2-203ENST00000503837 4752 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 GPNMB-202ENST00000381990 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 CAST-213ENST00000504465 2336 ntAPPRIS ALT2 TSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 ZSCAN31-219ENST00000611469 2669 ntTSL 4 BASIC7.11□□□□□ -1.27
COL8A1P27658 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC002480.4-201ENST00000414116 2592 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 SRSF10-207ENST00000453840 1808 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 WISP3-202ENST00000361714 2512 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 IDI2-201ENST00000277517 1359 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AC092681.2-201ENST00000565102 3044 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 PSMC1P7-201ENST00000495689 1315 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 RBBP5-202ENST00000367164 4290 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AC008522.1-201ENST00000639479 2906 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 THBS3-210ENST00000541576 3200 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 OR5P1P-201ENST00000299512 925 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 Y_RNA.132-201ENST00000363421 102 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 snoZ40.1-201ENST00000364540 72 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AL450313.1-201ENST00000366376 452 ntTSL 3 BASIC7.1□□□□□ -1.27
COL8A1P27658 RNU4-70P-201ENST00000384579 139 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 RPL7-203ENST00000396466 762 ntTSL 3 BASIC7.1□□□□□ -1.27
COL8A1P27658 ST13P16-201ENST00000401760 781 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AC023141.10-201ENST00000415634 200 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC011753.4-201ENST00000417974 311 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 NIP7P1-201ENST00000433227 512 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 ATP5F1P1-201ENST00000433775 569 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 BX679664.2-201ENST00000439282 283 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC7.1□□□□□ -1.27
COL8A1P27658 AL513533.1-201ENST00000453728 415 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 BZW1P1-201ENST00000454901 1240 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 HNRNPCP7-201ENST00000456056 905 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC010878.1-201ENST00000456500 1047 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC005165.2-201ENST00000466070 380 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AP002884.1-201ENST00000479691 655 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 RPS29P25-201ENST00000481709 171 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC019235.1-201ENST00000503847 207 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 PDLIM1P4-201ENST00000504327 1006 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC008868.1-201ENST00000509786 737 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 KRT18P54-201ENST00000513396 748 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC7.1□□□□□ -1.27
COL8A1P27658 IGHV3-32-201ENST00000519182 355 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC7.1□□□□□ -1.27
COL8A1P27658 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL8A1P27658 MIR5192-201ENST00000579892 92 ntBASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC7.1□□□□□ -1.27
COL8A1P27658 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC7.1□□□□□ -1.27
COL8A1P27658 AC136443.5-201ENST00000603741 370 ntBASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms