Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL451142.1-201ENST00000375867 775 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 OR7E156P-201ENST00000400303 464 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC116036.1-201ENST00000412199 367 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL929472.1-201ENST00000417484 429 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 AC115283.1-201ENST00000427353 400 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.6□□□□□ -1.51
LMX1BO60663 EIF5AP4-201ENST00000441206 465 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC092967.1-201ENST00000449016 481 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.6□□□□□ -1.51
LMX1BO60663 TPRKBP1-201ENST00000456243 481 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 AC090568.1-201ENST00000509499 856 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC018797.1-201ENST00000510791 255 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 SCARNA5-201ENST00000516201 276 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.6□□□□□ -1.51
LMX1BO60663 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 AC125612.1-201ENST00000547580 377 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC090115.2-201ENST00000548060 883 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL845552.1-201ENST00000556820 323 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.6□□□□□ -1.51
LMX1BO60663 AC015982.1-201ENST00000608113 465 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL137246.2-201ENST00000613439 662 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL445649.1-201ENST00000615941 691 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL357153.4-201ENST00000620487 1016 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 RAB28P4-201ENST00000622233 665 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC243960.7-201ENST00000623532 707 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL356094.1-201ENST00000624663 1212 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AC018659.2-201ENST00000624690 715 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL132640.3-201ENST00000630473 177 ntBASIC5.6□□□□□ -1.51
LMX1BO60663 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
LMX1BO60663 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.6□□□□□ -1.51
LMX1BO60663 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.6□□□□□ -1.51
LMX1BO60663 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LMX1BO60663 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LMX1BO60663 AL355377.1-201ENST00000621125 1653 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.59□□□□□ -1.51
LMX1BO60663 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 LINC01613-201ENST00000561476 2780 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
LMX1BO60663 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LMX1BO60663 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 RNA5SP279-201ENST00000365513 117 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 U3.52-201ENST00000384034 216 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 RBBP4P5-201ENST00000398583 1266 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 TMA16P2-201ENST00000413187 601 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AL359092.1-201ENST00000417156 265 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 AL360013.1-201ENST00000419031 858 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 RPL23AP85-201ENST00000421838 433 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 NPM1P28-201ENST00000492269 840 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 RN7SL362P-201ENST00000494228 267 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 RPL19P11-201ENST00000495944 589 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 UGT2A3P7-201ENST00000510485 734 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.59□□□□□ -1.51
LMX1BO60663 RN7SL208P-201ENST00000577964 296 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 AC233702.7-202ENST00000582941 211 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 DYNLL1P1-201ENST00000595442 269 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms