Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 AL590623.1-201ENST00000427864 105 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 RPS21P1-201ENST00000434479 247 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 ANXA2P2-201ENST00000435128 1020 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 RPL5P25-201ENST00000441148 775 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 PRKAR1AP1-201ENST00000441422 1162 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC078788.2-201ENST00000462300 382 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 RN7SL145P-201ENST00000469955 296 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 TRBV8-1-201ENST00000481590 279 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 RN7SKP5-201ENST00000517045 272 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC022679.2-201ENST00000522186 813 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 AP005639.1-201ENST00000526939 192 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 NDUFA3P2-201ENST00000531434 232 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 EIF4A3P1-201ENST00000578499 647 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC063977.7-201ENST00000594454 337 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.37□□□□□ -1.55
HOXA1P49639 PRR13P3-201ENST00000603578 376 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC016542.1-201ENST00000608259 493 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 AC004241.2-201ENST00000614562 444 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AC005393.1-201ENST00000617916 584 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXA1P49639 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 AC020656.2-201ENST00000613291 5309 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXA1P49639 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA1P49639 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA1P49639 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 OR10D1P-201ENST00000355343 936 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 RNU6-819P-201ENST00000364116 107 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 RN7SKP118-201ENST00000364331 330 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA1P49639 AL357078.2-201ENST00000416486 427 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 CLCN3P1-201ENST00000423965 1017 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 SNRPEP5-201ENST00000425442 278 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 NIP7P1-201ENST00000433227 512 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC009518.3-201ENST00000438972 253 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 MGAT2P1-201ENST00000449718 797 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AL354714.5-201ENST00000450131 590 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HOXA1P49639 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 AL035690.1-201ENST00000490892 383 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 SNX18P23-201ENST00000510867 677 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC097460.2-201ENST00000511857 741 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 DCAF13P2-201ENST00000514188 555 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AC104997.1-201ENST00000519761 717 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.36□□□□□ -1.55
HOXA1P49639 OR4A46P-201ENST00000527255 933 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXA1P49639 OR52K3P-201ENST00000531655 943 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXA1P49639 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXA1P49639 AC011921.2-201ENST00000589465 152 ntBASIC5.36□□□□□ -1.55
HOXA1P49639 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXA1P49639 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.36□□□□□ -1.55
HOXA1P49639 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms