Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPS3AP2-201ENST00000407190 754 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 RN7SKP161-201ENST00000411110 305 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC8.1□□□□□ -1.11
HOXC9P31274 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC8.1□□□□□ -1.11
HOXC9P31274 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC8.1□□□□□ -1.11
HOXC9P31274 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC8.1□□□□□ -1.11
HOXC9P31274 AC023245.1-201ENST00000468501 517 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 AC114728.1-201ENST00000488289 483 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXC9P31274 SUMO2P7-201ENST00000511179 285 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 AC112191.2-201ENST00000522428 333 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC8.1□□□□□ -1.11
HOXC9P31274 AC006530.1-201ENST00000555980 571 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC8.1□□□□□ -1.11
HOXC9P31274 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
HOXC9P31274 RARSP1-201ENST00000542842 1418 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC8.1□□□□□ -1.11
HOXC9P31274 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
HOXC9P31274 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
HOXC9P31274 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 WDR95P-201ENST00000425638 1542 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 AC006213.6-201ENST00000623722 4179 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 AC105749.1-201ENST00000631338 2008 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
HOXC9P31274 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
HOXC9P31274 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC8.09□□□□□ -1.11
HOXC9P31274 BX510359.3-201ENST00000422168 306 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 TUBB4BP6-201ENST00000437576 479 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC8.09□□□□□ -1.11
HOXC9P31274 KRTAP8-2P-201ENST00000440620 186 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 RPSAP39-201ENST00000467439 883 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 AC110056.1-201ENST00000525759 911 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 OR6M2P-201ENST00000529831 871 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC8.09□□□□□ -1.11
HOXC9P31274 MYL6-213ENST00000549017 502 ntTSL 3 BASIC8.09□□□□□ -1.11
HOXC9P31274 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC8.09□□□□□ -1.11
HOXC9P31274 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC8.09□□□□□ -1.11
HOXC9P31274 MIR3176-201ENST00000582210 90 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 AL021918.2-201ENST00000613415 194 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 AL049767.1-202ENST00000637826 242 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC8.09□□□□□ -1.11
HOXC9P31274 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 PARP4P1-201ENST00000435945 2337 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC8.09□□□□□ -1.11
HOXC9P31274 AC022905.1-201ENST00000503430 3048 ntBASIC8.09□□□□□ -1.11
HOXC9P31274 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
HOXC9P31274 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HOXC9P31274 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
HOXC9P31274 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.12
HOXC9P31274 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HOXC9P31274 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HOXC9P31274 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC027279.1-201ENST00000568885 4284 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC8.08□□□□□ -1.12
HOXC9P31274 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC8.08□□□□□ -1.12
HOXC9P31274 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC8.08□□□□□ -1.12
HOXC9P31274 LINC02035-201ENST00000610128 5476 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HOXC9P31274 SELENOWP1-201ENST00000322792 252 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 RN7SKP293-201ENST00000411389 296 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC8.08□□□□□ -1.12
HOXC9P31274 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC074386.1-201ENST00000476560 767 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 RPL7L1P4-201ENST00000513004 707 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC8.08□□□□□ -1.12
HOXC9P31274 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC8.08□□□□□ -1.12
HOXC9P31274 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC8.08□□□□□ -1.12
HOXC9P31274 AC130360.2-201ENST00000533477 1556 ntBASIC8.08□□□□□ -1.12
HOXC9P31274 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HOXC9P31274 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC8.08□□□□□ -1.12
HOXC9P31274 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
HOXC9P31274 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
HOXC9P31274 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC8.08□□□□□ -1.12
HOXC9P31274 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HOXC9P31274 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC8.08□□□□□ -1.12
HOXC9P31274 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 579.3 ms