Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXD4P09016 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HOXD4P09016 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXD4P09016 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXD4P09016 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 RNU11-201ENST00000387069 134 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXD4P09016 AC083862.1-201ENST00000427378 1242 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AC108479.1-201ENST00000431142 427 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXD4P09016 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 OR2AF1P-201ENST00000454899 889 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 Z83838.1-202ENST00000456225 839 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXD4P09016 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXD4P09016 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXD4P09016 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 AC008055.1-201ENST00000547032 609 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AC090115.2-201ENST00000548060 883 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXD4P09016 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXD4P09016 AL360012.1-201ENST00000602813 131 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 AL135999.3-201ENST00000610501 812 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.84□□□□□ -1.47
HOXD4P09016 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXD4P09016 AL136531.3-201ENST00000624378 3658 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXD4P09016 AP005139.1-201ENST00000580702 1647 ntBASIC5.84□□□□□ -1.47
HOXD4P09016 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXD4P09016 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.84□□□□□ -1.48
HOXD4P09016 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
HOXD4P09016 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.84□□□□□ -1.48
HOXD4P09016 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.84□□□□□ -1.48
HOXD4P09016 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.48
HOXD4P09016 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC125238.2-201ENST00000430003 1440 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AC005725.1-201ENST00000577346 2607 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXD4P09016 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 AC006511.3-201ENST00000624929 1783 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AC093278.2-201ENST00000564956 2485 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.83□□□□□ -1.48
HOXD4P09016 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 MIR188-201ENST00000385034 86 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HOXD4P09016 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXD4P09016 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 NAP1L4P2-201ENST00000425958 899 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 Z68868.1-201ENST00000429048 544 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXD4P09016 IGLV3-4-201ENST00000432300 244 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 EMC3-AS1-205ENST00000438698 534 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXD4P09016 RN7SL254P-201ENST00000460609 284 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AC094085.1-201ENST00000468914 584 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC083906.1-201ENST00000509298 406 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXD4P09016 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXD4P09016 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXD4P09016 BX323046.1-201ENST00000610145 535 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AL136097.3-201ENST00000611097 505 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 RPL31P11-201ENST00000426558 1558 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 AL355834.1-201ENST00000556602 3965 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXD4P09016 AC093671.1-201ENST00000624981 2929 ntBASIC5.83□□□□□ -1.48
HOXD4P09016 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HOXD4P09016 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXD4P09016 LCOR-201ENST00000286067 4542 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
HOXD4P09016 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms