Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC091078.2-201ENST00000557145 559 ntBASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 RNU4ATAC-201ENST00000580972 127 ntBASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 FAM27E4-201ENST00000605259 342 ntBASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.81□□□□□ -1.16
SHANK3Q9BYB0 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 RPL35AP24-201ENST00000413846 330 ntBASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 OR5W1P-201ENST00000423705 938 ntBASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 AC012075.1-201ENST00000436549 580 ntBASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 RNU6-615P-201ENST00000516065 106 ntBASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 OR5D15P-201ENST00000531671 942 ntBASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
SHANK3Q9BYB0 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AC004014.2-201ENST00000623718 5122 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AC018809.2-201ENST00000602436 3823 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 MIR550A3-201ENST00000390735 95 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 OR7A1P-201ENST00000601206 970 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 RPSAP73-201ENST00000614820 330 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 MIR8089-201ENST00000620165 82 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AP002370.1-201ENST00000528055 1602 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 AC025470.1-201ENST00000510053 2032 ntBASIC7.79□□□□□ -1.16
SHANK3Q9BYB0 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC096921.2-201ENST00000561507 1916 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RN7SKP128-201ENST00000364270 303 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RN7SKP166-201ENST00000410812 305 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RN7SKP29-201ENST00000410957 272 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FAR2P2-201ENST00000413041 594 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FAR2P4-202ENST00000425399 584 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FAR2P1-206ENST00000449736 709 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 HAUS8P1-201ENST00000549005 542 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AP001784.1-201ENST00000624107 428 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC087565.3-203ENST00000641018 837 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MALAT1-202ENST00000534336 8708 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 SNRPEP6-201ENST00000407465 277 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RPS17P15-201ENST00000475609 349 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC073916.1-201ENST00000545095 130 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms