Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC022164.1-201ENST00000568767 2673 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC018628.1-201ENST00000624147 3819 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 TET1P1-201ENST00000426627 2301 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 SNORD35A-201ENST00000363389 86 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 MIR551B-201ENST00000384984 96 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 ARSFP1-201ENST00000398758 477 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 GGA1-205ENST00000405147 575 ntTSL 4 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 RN7SKP161-201ENST00000411110 305 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 CYP4F30P-202ENST00000420048 405 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 RPL23AP85-201ENST00000421838 433 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 PTPN2P1-201ENST00000423212 1072 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL589794.1-201ENST00000424971 390 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AP003385.1-201ENST00000426387 893 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC003989.1-201ENST00000434569 565 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL034369.1-201ENST00000453808 477 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 CEACAMP11-201ENST00000455211 583 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 SNX18P26-201ENST00000458433 740 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 RPS3AP49-201ENST00000472161 790 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 RPL5P33-201ENST00000487833 905 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC147055.1-201ENST00000509261 750 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 SCARNA5-201ENST00000516201 276 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 RNU6-362P-201ENST00000516736 90 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 RN7SL475P-201ENST00000583379 298 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 RPS11-205ENST00000599561 430 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC138473.1-201ENST00000605717 526 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC093635.1-201ENST00000609028 555 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL118556.2-201ENST00000614375 824 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 TEX41-255ENST00000626404 610 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC068769.1-201ENST00000474767 2426 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.5□□□□□ -1.53
NKX3-1Q99801 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
NKX3-1Q99801 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
NKX3-1Q99801 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AP001541.1-201ENST00000623322 1904 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 OR11H13P-201ENST00000359695 979 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 SNORA7A-201ENST00000384765 139 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms