Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 BX322650.1-201ENST00000332359 2143 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 ARHGEF9-233ENST00000637520 5682 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC006466.1-201ENST00000438721 289 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC114728.1-201ENST00000488289 483 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 NPM1P27-201ENST00000502784 830 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 IGBP1P1-201ENST00000554337 1009 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 NMNAT1P5-201ENST00000559657 841 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 LGALS8-212ENST00000450372 6281 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AKAP2-202ENST00000374525 6866 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 POT1-202ENST00000393329 3950 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 RNF41-201ENST00000345093 5596 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 RPS4XP5-201ENST00000419038 768 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC006335.2-201ENST00000437993 330 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 RPS3AP41-201ENST00000462701 778 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 RNU4ATAC-201ENST00000580972 127 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL049539.1-201ENST00000611964 459 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 ZAN-204ENST00000546292 8378 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 SLC9A8-202ENST00000417961 6309 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC022164.1-201ENST00000568767 2673 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 BHLHB9-202ENST00000372735 5130 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 PDE4DIP-237ENST00000585156 8439 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL133173.1-201ENST00000423458 397 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC087672.1-201ENST00000479876 766 ntBASIC4.8□□□□□ -1.64
VPS13CQ709C8 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS13CQ709C8 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS13CQ709C8 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 CCSER1-209ENST00000509176 5847 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 MTCYBP21-201ENST00000443300 1113 ntBASIC4.79□□□□□ -1.64
VPS13CQ709C8 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 AL035090.1-201ENST00000454835 332 ntBASIC4.79□□□□□ -1.64
VPS13CQ709C8 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 MIR378J-201ENST00000611988 109 ntBASIC4.79□□□□□ -1.64
VPS13CQ709C8 SVIL-203ENST00000375400 6729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 ITIH5-202ENST00000397146 6721 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 AC022819.1-201ENST00000563495 3910 ntBASIC4.79□□□□□ -1.64
VPS13CQ709C8 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 TTC14-203ENST00000412756 4568 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS13CQ709C8 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS13CQ709C8 SNORA16A-201ENST00000384342 137 ntBASIC4.79□□□□□ -1.64
VPS13CQ709C8 AC008753.1-201ENST00000423096 284 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms