Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 OR11H13P-201ENST00000359695 979 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 RPL35AP31-201ENST00000418340 337 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 AL512637.1-201ENST00000439523 1231 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 SNORA70.20-201ENST00000516848 126 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 IGHV1-14-201ENST00000523391 241 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 OR6M2P-201ENST00000529831 871 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 AC006924.1-201ENST00000610750 559 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 CCNT2P1-201ENST00000423082 1315 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 AC022905.1-201ENST00000503430 3048 ntBASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 RPL35AP24-201ENST00000413846 330 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 YWHAEP1-201ENST00000453697 763 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC090958.1-201ENST00000511122 351 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 CYCSP22-201ENST00000517555 339 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC015802.2-201ENST00000589690 189 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC037198.3-201ENST00000616754 526 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC021766.1-201ENST00000624404 741 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC092725.2-201ENST00000567658 1389 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TANK-205ENST00000405852 2155 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AL391262.1-201ENST00000556558 1992 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 SNORA43.1-201ENST00000364863 140 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 RNU4-34P-201ENST00000410431 124 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 BZW1P1-201ENST00000454901 1240 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 OR5M14P-201ENST00000506803 618 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 RN7SL544P-201ENST00000617232 284 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 RN7SL763P-201ENST00000620922 284 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC012254.5-201ENST00000623573 478 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 Z93929.1-201ENST00000418200 1475 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 AC119674.1-202ENST00000641333 1860 ntBASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC88AQ3V6T2 CR383656.5-201ENST00000547616 1340 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 MROH3P-201ENST00000435735 2676 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC011369.2-201ENST00000624423 1567 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 EEF1A1P24-201ENST00000451469 1378 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AL163193.1-201ENST00000444895 788 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 OTX2P1-201ENST00000450956 354 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC007386.1-201ENST00000455212 582 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC092593.2-201ENST00000513866 913 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC079600.1-201ENST00000550326 297 ntBASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC88AQ3V6T2 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms