Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HDAC4P56524 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.69□□□□□ -1.34
HDAC4P56524 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.69□□□□□ -1.34
HDAC4P56524 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HDAC4P56524 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.69□□□□□ -1.34
HDAC4P56524 AL645939.3-201ENST00000435408 225 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 AC096632.2-201ENST00000438139 1239 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.69□□□□□ -1.34
HDAC4P56524 AC019084.1-201ENST00000457337 432 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.69□□□□□ -1.34
HDAC4P56524 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.69□□□□□ -1.34
HDAC4P56524 IGKV1D-22-201ENST00000518953 324 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.69□□□□□ -1.34
HDAC4P56524 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HDAC4P56524 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
HDAC4P56524 TPRX1P1-201ENST00000557620 319 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.69□□□□□ -1.34
HDAC4P56524 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.69□□□□□ -1.34
HDAC4P56524 AL589743.6-201ENST00000611025 117 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 NF1P10-201ENST00000613227 742 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 AP001885.1-201ENST00000621658 558 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.69□□□□□ -1.34
HDAC4P56524 AC005261.2-201ENST00000593427 4258 ntBASIC6.69□□□□□ -1.34
HDAC4P56524 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.69□□□□□ -1.34
HDAC4P56524 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
HDAC4P56524 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC107977.1-201ENST00000355745 939 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 RNA5SP350-201ENST00000363298 111 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 ZNF736P10Y-201ENST00000403990 1110 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 RPL23AP18-201ENST00000416139 468 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 Z82198.3-201ENST00000421145 199 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AL139184.1-202ENST00000422303 222 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AL354893.1-201ENST00000433735 348 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 RPEP4-201ENST00000437636 602 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC064862.5-201ENST00000440618 334 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 SNX18P26-201ENST00000458433 740 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC007688.1-201ENST00000475592 759 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.68□□□□□ -1.34
HDAC4P56524 RNU6-551P-201ENST00000516661 103 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.68□□□□□ -1.34
HDAC4P56524 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC025283.1-201ENST00000572039 734 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC233702.7-202ENST00000582941 211 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 MIR4310-201ENST00000582950 57 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 MIR212-201ENST00000586026 110 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC011497.2-201ENST00000600255 639 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC091193.1-201ENST00000604640 448 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.68□□□□□ -1.34
HDAC4P56524 MIR6780B-201ENST00000610307 79 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AC024255.1-201ENST00000614376 102 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.68□□□□□ -1.34
HDAC4P56524 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.68□□□□□ -1.34
HDAC4P56524 AC090220.1-201ENST00000593078 1699 ntBASIC6.68□□□□□ -1.34
HDAC4P56524 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDAC4P56524 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
HDAC4P56524 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.67□□□□□ -1.34
HDAC4P56524 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDAC4P56524 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDAC4P56524 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
HDAC4P56524 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.67□□□□□ -1.34
HDAC4P56524 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.67□□□□□ -1.34
HDAC4P56524 AL157884.1-201ENST00000424561 454 ntBASIC6.67□□□□□ -1.34
HDAC4P56524 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
HDAC4P56524 ARMC4P1-201ENST00000438905 707 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms