Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR1322-201ENST00000638013 71 ntBASIC7.55□□□□□ -1.2
LIG3P49916 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
LIG3P49916 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 AC090132.1-201ENST00000524071 1480 ntBASIC7.55□□□□□ -1.2
LIG3P49916 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC7.54□□□□□ -1.2
LIG3P49916 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 ABCA11P-202ENST00000504019 2110 ntBASIC7.54□□□□□ -1.2
LIG3P49916 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 YES1P1-201ENST00000418510 1628 ntBASIC7.54□□□□□ -1.2
LIG3P49916 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 ANKRD36P1-201ENST00000344424 659 ntBASIC7.54□□□□□ -1.2
LIG3P49916 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
LIG3P49916 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
LIG3P49916 CREM-214ENST00000395887 849 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 RNU4-72P-201ENST00000410754 173 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 SNX18P13-201ENST00000412442 529 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AC127537.1-201ENST00000418183 748 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC231533.2-201ENST00000419045 978 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC7.54□□□□□ -1.2
LIG3P49916 ATP5LP4-201ENST00000434169 307 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC090018.1-201ENST00000434369 367 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 ARL4AP3-201ENST00000441452 574 ntBASIC7.54□□□□□ -1.2
LIG3P49916 HMGB3P6-201ENST00000444896 598 ntBASIC7.54□□□□□ -1.2
LIG3P49916 SEPT14P24-201ENST00000447236 180 ntBASIC7.54□□□□□ -1.2
LIG3P49916 RPL31P3-201ENST00000458430 332 ntBASIC7.54□□□□□ -1.2
LIG3P49916 CREM-224ENST00000468236 582 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 RPL5P11-201ENST00000498068 893 ntBASIC7.54□□□□□ -1.2
LIG3P49916 MTND6P8-201ENST00000503471 522 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC106800.2-201ENST00000514009 1103 ntBASIC7.54□□□□□ -1.2
LIG3P49916 RNU6-1129P-201ENST00000515964 104 ntBASIC7.54□□□□□ -1.2
LIG3P49916 RN7SKP248-201ENST00000516278 305 ntBASIC7.54□□□□□ -1.2
LIG3P49916 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC7.54□□□□□ -1.2
LIG3P49916 AC011611.5-201ENST00000552477 578 ntBASIC7.54□□□□□ -1.2
LIG3P49916 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC7.54□□□□□ -1.2
LIG3P49916 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 AC015802.2-201ENST00000589690 189 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC7.54□□□□□ -1.2
LIG3P49916 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 BMS1P7-201ENST00000602440 1052 ntBASIC7.54□□□□□ -1.2
LIG3P49916 MRPS35P3-201ENST00000603189 709 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AP002906.1-201ENST00000603405 233 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC7.54□□□□□ -1.2
LIG3P49916 CCL14-202ENST00000618404 898 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 AC068792.1-201ENST00000621354 417 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC015722.2-201ENST00000622210 551 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AC073488.8-201ENST00000631952 757 ntBASIC7.54□□□□□ -1.2
LIG3P49916 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 AL357556.1-201ENST00000421884 1388 ntBASIC7.54□□□□□ -1.2
LIG3P49916 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 JPX-212ENST00000639185 9658 ntTSL 5 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms