Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NEK2P2-201ENST00000438441 1338 ntBASIC5.91□□□□□ -1.46
SOX3P41225 ZNF402P-201ENST00000404435 3100 ntBASIC5.91□□□□□ -1.46
SOX3P41225 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 AC010624.4-201ENST00000597606 1351 ntBASIC5.91□□□□□ -1.46
SOX3P41225 AC110373.1-201ENST00000505994 3505 ntBASIC5.91□□□□□ -1.46
SOX3P41225 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.91□□□□□ -1.46
SOX3P41225 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SOX3P41225 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
SOX3P41225 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.46
SOX3P41225 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.9□□□□□ -1.46
SOX3P41225 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.9□□□□□ -1.46
SOX3P41225 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
SOX3P41225 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 SNORD16-201ENST00000362803 99 ntBASIC5.9□□□□□ -1.46
SOX3P41225 RNA5SP279-201ENST00000365513 117 ntBASIC5.9□□□□□ -1.46
SOX3P41225 RN7SKP187-201ENST00000365536 330 ntBASIC5.9□□□□□ -1.46
SOX3P41225 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.9□□□□□ -1.46
SOX3P41225 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 AL050335.1-201ENST00000396909 869 ntBASIC5.9□□□□□ -1.46
SOX3P41225 MIR1275-201ENST00000408770 80 ntBASIC5.9□□□□□ -1.46
SOX3P41225 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 RPL34P27-201ENST00000428810 349 ntBASIC5.9□□□□□ -1.46
SOX3P41225 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 EMC3-AS1-205ENST00000438698 534 ntBASIC5.9□□□□□ -1.46
SOX3P41225 CXCR2P1-202ENST00000443392 1074 ntBASIC5.9□□□□□ -1.46
SOX3P41225 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.9□□□□□ -1.46
SOX3P41225 AC118758.1-202ENST00000454719 225 ntBASIC5.9□□□□□ -1.46
SOX3P41225 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.9□□□□□ -1.46
SOX3P41225 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.9□□□□□ -1.46
SOX3P41225 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 RNA5SP473-201ENST00000516402 125 ntBASIC5.9□□□□□ -1.46
SOX3P41225 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 IGHV1-14-201ENST00000523391 241 ntBASIC5.9□□□□□ -1.46
SOX3P41225 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 AC073916.1-201ENST00000545095 130 ntBASIC5.9□□□□□ -1.46
SOX3P41225 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 AC009729.1-201ENST00000548873 1133 ntBASIC5.9□□□□□ -1.46
SOX3P41225 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 AC005632.2-201ENST00000564271 828 ntBASIC5.9□□□□□ -1.46
SOX3P41225 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SOX3P41225 AL078601.3-201ENST00000573303 535 ntBASIC5.9□□□□□ -1.46
SOX3P41225 OR1E3-201ENST00000575608 948 ntBASIC5.9□□□□□ -1.46
SOX3P41225 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.9□□□□□ -1.46
SOX3P41225 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.9□□□□□ -1.46
SOX3P41225 MIR6721-201ENST00000617181 87 ntBASIC5.9□□□□□ -1.46
SOX3P41225 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.9□□□□□ -1.46
SOX3P41225 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.9□□□□□ -1.47
SOX3P41225 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SOX3P41225 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SOX3P41225 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.9□□□□□ -1.47
SOX3P41225 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SOX3P41225 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.47
SOX3P41225 AC125238.2-201ENST00000430003 1440 ntBASIC5.9□□□□□ -1.47
SOX3P41225 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
SOX3P41225 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 AL359976.1-201ENST00000418655 3528 ntBASIC5.89□□□□□ -1.47
SOX3P41225 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SOX3P41225 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 MIR188-201ENST00000385034 86 ntBASIC5.89□□□□□ -1.47
SOX3P41225 RNA5SP198-201ENST00000410376 127 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX3P41225 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AC099782.1-201ENST00000425889 474 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AC245884.2-201ENST00000426257 404 ntBASIC5.89□□□□□ -1.47
SOX3P41225 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 GAPDHP59-201ENST00000435908 267 ntBASIC5.89□□□□□ -1.47
SOX3P41225 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.89□□□□□ -1.47
SOX3P41225 RN7SL362P-201ENST00000494228 267 ntBASIC5.89□□□□□ -1.47
SOX3P41225 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 Vault.2-201ENST00000516519 98 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 AC084337.1-201ENST00000524809 686 ntBASIC5.89□□□□□ -1.47
SOX3P41225 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms