Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 AL591848.4-201ENST00000567832 3472 ntBASIC10.07□□□□□ -0.8
CUX1P39880 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
CUX1P39880 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX1P39880 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 OR7E157P-201ENST00000494376 911 ntBASIC10.07□□□□□ -0.8
CUX1P39880 AC231760.1-201ENST00000498002 260 ntBASIC10.07□□□□□ -0.8
CUX1P39880 SNORA43.3-201ENST00000517240 103 ntBASIC10.07□□□□□ -0.8
CUX1P39880 MINCR-206ENST00000524335 499 ntTSL 2 BASIC10.07□□□□□ -0.8
CUX1P39880 OR4A46P-201ENST00000527255 933 ntBASIC10.07□□□□□ -0.8
CUX1P39880 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 ASB8-215ENST00000540782 659 ntTSL 3 BASIC10.07□□□□□ -0.8
CUX1P39880 AL049840.6-201ENST00000604583 345 ntBASIC10.07□□□□□ -0.8
CUX1P39880 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 SNORD91A-202ENST00000609620 191 ntBASIC10.07□□□□□ -0.8
CUX1P39880 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 AC003992.1-201ENST00000635364 557 ntBASIC10.07□□□□□ -0.8
CUX1P39880 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CUX1P39880 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC10.07□□□□□ -0.8
CUX1P39880 AC025470.1-201ENST00000510053 2032 ntBASIC10.07□□□□□ -0.8
CUX1P39880 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC10.07□□□□□ -0.8
CUX1P39880 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX1P39880 AC007342.5-201ENST00000571340 2142 ntBASIC10.06□□□□□ -0.8
CUX1P39880 AC104447.1-201ENST00000624214 2124 ntBASIC10.06□□□□□ -0.8
CUX1P39880 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX1P39880 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 AC011379.1-201ENST00000508713 3025 ntBASIC10.06□□□□□ -0.8
CUX1P39880 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC10.06□□□□□ -0.8
CUX1P39880 RNA5SP211-201ENST00000365516 117 ntBASIC10.06□□□□□ -0.8
CUX1P39880 RPS12P17-201ENST00000438591 377 ntBASIC10.06□□□□□ -0.8
CUX1P39880 CUBNP2-201ENST00000443534 1139 ntBASIC10.06□□□□□ -0.8
CUX1P39880 SDC4P-201ENST00000453285 601 ntBASIC10.06□□□□□ -0.8
CUX1P39880 AC005532.2-201ENST00000467154 373 ntBASIC10.06□□□□□ -0.8
CUX1P39880 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 AL021368.3-201ENST00000607119 578 ntBASIC10.06□□□□□ -0.8
CUX1P39880 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC10.06□□□□□ -0.8
CUX1P39880 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CUX1P39880 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
CUX1P39880 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 BX322650.1-201ENST00000332359 2143 ntBASIC10.05□□□□□ -0.8
CUX1P39880 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
CUX1P39880 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 RNU4-34P-201ENST00000410431 124 ntBASIC10.05□□□□□ -0.8
CUX1P39880 GABARAPL3-201ENST00000412799 354 ntBASIC10.05□□□□□ -0.8
CUX1P39880 SPRYD7P1-201ENST00000443861 570 ntBASIC10.05□□□□□ -0.8
CUX1P39880 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 GAPDHP71-201ENST00000511530 1003 ntBASIC10.05□□□□□ -0.8
CUX1P39880 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC10.05□□□□□ -0.8
CUX1P39880 MRPS16P1-201ENST00000523462 412 ntBASIC10.05□□□□□ -0.8
CUX1P39880 OR56A7P-201ENST00000524865 941 ntBASIC10.05□□□□□ -0.8
CUX1P39880 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC10.05□□□□□ -0.8
CUX1P39880 TXNP4-201ENST00000575018 310 ntBASIC10.05□□□□□ -0.8
CUX1P39880 uc_338.26-201ENST00000612659 160 ntBASIC10.05□□□□□ -0.8
CUX1P39880 AL445647.2-201ENST00000615170 130 ntBASIC10.05□□□□□ -0.8
CUX1P39880 MIR7155-201ENST00000615925 56 ntBASIC10.05□□□□□ -0.8
CUX1P39880 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CUX1P39880 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC10.05□□□□□ -0.8
CUX1P39880 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
CUX1P39880 AL157831.2-201ENST00000564681 3095 ntBASIC10.05□□□□□ -0.8
CUX1P39880 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
CUX1P39880 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CUX1P39880 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC10.05□□□□□ -0.8
CUX1P39880 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 AC092821.3-202ENST00000641304 2767 ntBASIC10.04□□□□□ -0.8
CUX1P39880 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 OR2W4P-201ENST00000406496 926 ntBASIC10.04□□□□□ -0.8
CUX1P39880 OR5W1P-201ENST00000423705 938 ntBASIC10.04□□□□□ -0.8
CUX1P39880 OTX2P1-201ENST00000450956 354 ntBASIC10.04□□□□□ -0.8
CUX1P39880 RPL35AP19-201ENST00000469425 329 ntBASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms