Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 AC011447.6-201ENST00000623510 2598 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 AC005042.1-201ENST00000393397 800 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.33□□□□□ -1.24
BRCA1P38398 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 AC023245.1-201ENST00000468501 517 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 AC022215.1-201ENST00000481770 362 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.33□□□□□ -1.24
BRCA1P38398 NRBF2P4-201ENST00000520874 850 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.33□□□□□ -1.24
BRCA1P38398 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.33□□□□□ -1.24
BRCA1P38398 AC087783.2-201ENST00000605070 562 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC7.33□□□□□ -1.24
BRCA1P38398 AP000550.3-201ENST00000637734 379 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 AC105114.1-201ENST00000624795 1862 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.33□□□□□ -1.24
BRCA1P38398 HDAC1P2-201ENST00000453661 1398 ntBASIC7.33□□□□□ -1.24
BRCA1P38398 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
BRCA1P38398 AC105342.1-201ENST00000378334 6848 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
BRCA1P38398 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 MTHFD2P5-201ENST00000320415 844 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 AL606490.8-201ENST00000441624 319 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 OR7E116P-201ENST00000448529 957 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 MRPS16P1-201ENST00000523462 412 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 uc_338.26-201ENST00000612659 160 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 CLCA3P-203ENST00000490028 2781 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 AL139805.2-201ENST00000455305 2433 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC7.32□□□□□ -1.24
BRCA1P38398 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
BRCA1P38398 MIR433-201ENST00000384837 93 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.32□□□□□ -1.24
BRCA1P38398 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.32□□□□□ -1.24
BRCA1P38398 RN7SL30P-201ENST00000488416 306 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.32□□□□□ -1.24
BRCA1P38398 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC7.32□□□□□ -1.24
BRCA1P38398 AL445528.2-201ENST00000620582 470 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 CASC19-264ENST00000641912 1184 ntBASIC7.32□□□□□ -1.24
BRCA1P38398 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
BRCA1P38398 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC7.32□□□□□ -1.24
BRCA1P38398 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 MRRFP1-201ENST00000435941 1675 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 AC114786.1-201ENST00000512892 1415 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 BX322650.1-201ENST00000332359 2143 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 MAPK10-338ENST00000641647 3362 ntBASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms