Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
COL5A1P20908 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 MAK-202ENST00000354489 3941 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.92□□□□□ -1.46
COL5A1P20908 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 AC005618.1-201ENST00000606901 3148 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 MIR375-201ENST00000362103 64 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 RNA5SP46-201ENST00000362370 120 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 RNA5SP132-201ENST00000364725 118 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 AL391422.1-201ENST00000402155 436 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 BX119321.1-201ENST00000428912 797 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A1P20908 AC016027.4-201ENST00000450866 277 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 RN7SL165P-201ENST00000477476 291 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A1P20908 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 AP000864.1-201ENST00000609424 650 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.91□□□□□ -1.46
COL5A1P20908 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 TNPO1P2-201ENST00000426249 2665 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 ITPK1-AS1-201ENST00000553639 4701 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 AC027279.4-201ENST00000624371 2072 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
COL5A1P20908 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL5A1P20908 RNA5SP333-201ENST00000363466 118 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 RNA5SP334-201ENST00000364825 118 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 AC009237.1-201ENST00000442127 744 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A1P20908 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A1P20908 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A1P20908 AC011497.2-201ENST00000600255 639 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 SUMO2P15-201ENST00000604285 278 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 AC104695.2-201ENST00000605056 775 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 AL357562.1-201ENST00000624911 609 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 AC119674.1-217ENST00000641942 1086 ntBASIC5.91□□□□□ -1.46
COL5A1P20908 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
COL5A1P20908 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A1P20908 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL5A1P20908 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A1P20908 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
COL5A1P20908 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A1P20908 AK4P4-201ENST00000419465 646 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.9□□□□□ -1.46
COL5A1P20908 CYP4F30P-202ENST00000420048 405 ntBASIC5.9□□□□□ -1.46
COL5A1P20908 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms