Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CHMP4CQ96CF2 AL359976.1-201ENST00000418655 3528 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 PSMC1P6-201ENST00000477233 1319 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 PSMC1P4-201ENST00000515236 1327 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 MTHFD1P1-201ENST00000413059 2764 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC137056.2-201ENST00000624055 1958 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 SNORA38B-201ENST00000363524 131 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 MIR7-1-201ENST00000384871 110 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL023284.3-201ENST00000407767 334 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RN7SKP221-201ENST00000410420 301 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RNU6-564P-201ENST00000410983 104 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RANP6-201ENST00000413691 644 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RPSAP32-201ENST00000432681 526 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RPS7P10-201ENST00000464254 603 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 RPL37AP8-201ENST00000494116 276 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 KCTD9P4-201ENST00000526766 1166 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC063977.7-201ENST00000594454 337 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AL049840.5-201ENST00000602827 552 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC012175.1-201ENST00000603755 531 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC012254.5-201ENST00000623573 478 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC114546.4-201ENST00000624413 369 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC004808.2-201ENST00000627965 773 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 PPBPP2-201ENST00000513150 1362 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 CASC19-255ENST00000641733 1385 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 AC005332.9-201ENST00000620266 2921 ntBASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4CQ96CF2 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 API5P1-201ENST00000424316 1510 ntBASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 AC090181.3-201ENST00000624777 1514 ntBASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 AC019178.1-201ENST00000392337 440 ntBASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 AL353626.3-201ENST00000413399 657 ntBASIC7.78□□□□□ -1.16
CHMP4CQ96CF2 MTND4LP21-201ENST00000415303 295 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms