Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 AC079395.2-201ENST00000610982 737 ntBASIC9.32□□□□□ -0.92
SCAPERQ9BY12 AF117829.2-201ENST00000619538 361 ntBASIC9.32□□□□□ -0.92
SCAPERQ9BY12 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 AC061975.7-201ENST00000592016 2692 ntBASIC9.32□□□□□ -0.92
SCAPERQ9BY12 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 RPS2P45-201ENST00000469997 2057 ntBASIC9.32□□□□□ -0.92
SCAPERQ9BY12 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SCAPERQ9BY12 GNL2P1-201ENST00000451274 2190 ntBASIC9.32□□□□□ -0.92
SCAPERQ9BY12 SNORA74A-201ENST00000364089 198 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 SNORA43.1-201ENST00000364863 140 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 MIR541-201ENST00000401360 84 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 NPM1P4-201ENST00000414095 812 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 TSHZ2-205ENST00000626626 670 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 KCNMB3P1-202ENST00000493696 3389 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 CCNT2P1-201ENST00000423082 1315 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AL391422.1-201ENST00000402155 436 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 BMS1P17-202ENST00000416720 316 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 RN7SL610P-201ENST00000463845 291 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 RN7SL727P-201ENST00000482164 296 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 UBA52P7-201ENST00000486088 380 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC138866.2-201ENST00000508650 584 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 CASP5-209ENST00000531367 879 ntTSL 5 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC009120.3-201ENST00000563335 499 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SCAPERQ9BY12 FO393422.1-201ENST00000603908 708 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 AL445670.1-201ENST00000618889 801 ntBASIC9.31□□□□□ -0.92
SCAPERQ9BY12 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 HNRNPA1P54-201ENST00000411857 9714 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 NCOA4P3-201ENST00000513203 1877 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 U3.7-201ENST00000363668 216 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC092865.1-201ENST00000544395 1023 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC044860.2-201ENST00000561005 179 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AP001496.3-201ENST00000580230 913 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC9.3□□□□□ -0.92
SCAPERQ9BY12 IMMP1LP3-201ENST00000604197 224 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AL359704.2-201ENST00000604335 521 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 AC092944.2-201ENST00000605443 889 ntBASIC9.3□□□□□ -0.92
SCAPERQ9BY12 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SCAPERQ9BY12 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SCAPERQ9BY12 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SCAPERQ9BY12 AC012254.3-201ENST00000591183 2117 ntBASIC9.29□□□□□ -0.92
SCAPERQ9BY12 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC9.29□□□□□ -0.92
SCAPERQ9BY12 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms