Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL669831.5-218ENST00000591702 1873 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC009120.2-204ENST00000621548 2032 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC025809.2-201ENST00000625085 1802 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC074141.1-201ENST00000588129 2995 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 COX6B1P3-201ENST00000312310 260 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 RN7SKP77-201ENST00000363261 353 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 RNA5SP435-201ENST00000364044 108 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL139415.1-201ENST00000424862 352 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC068228.1-201ENST00000461723 211 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 RPL23AP68-201ENST00000480924 445 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 SNORA58-201ENST00000505219 137 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC090826.1-203ENST00000569235 490 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AL157899.1-201ENST00000604110 936 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 SNORA74.4-201ENST00000607595 199 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AP001264.1-201ENST00000620602 703 ntBASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC3Q9BQI4 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 RPL23AP85-201ENST00000421838 433 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 NAP1L4P2-201ENST00000425958 899 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC094019.1-201ENST00000434678 472 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 PNKDP1-201ENST00000435914 430 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 RN7SL221P-201ENST00000466190 281 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC115223.1-201ENST00000466377 870 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 RNU6ATAC39P-201ENST00000516309 149 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 TPRX1P1-201ENST00000557620 319 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC067773.1-201ENST00000603284 1094 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AL354950.1-201ENST00000614150 568 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AL357153.4-201ENST00000620487 1016 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC008691.1-209ENST00000642094 814 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AC062022.1-201ENST00000451026 1684 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 MAPK10-365ENST00000641902 3825 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms