Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE4Q8N205 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
SYNE4Q8N205 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
SYNE4Q8N205 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 CYP2G2P-201ENST00000594920 1485 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 RNU1-134P-201ENST00000362935 165 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AL713922.1-201ENST00000416477 747 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC092473.1-201ENST00000441098 221 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 DNAJC19P5-201ENST00000443295 316 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SNORA58-201ENST00000505219 137 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC091965.3-201ENST00000506236 208 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 RPL7L1P4-201ENST00000513004 707 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 Y_RNA.667-201ENST00000516212 107 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC135626.1-201ENST00000556983 435 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC016180.1-201ENST00000567945 403 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC073488.3-201ENST00000631611 778 ntBASIC7.83□□□□□ -1.16
SYNE4Q8N205 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE4Q8N205 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE4Q8N205 GUCY1B2-204ENST00000531898 1979 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AL133243.4-201ENST00000623116 3109 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 USP9YP19-201ENST00000412165 485 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 MARK2P12-201ENST00000420129 585 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 GAPDHP48-201ENST00000436626 961 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC002553.3-201ENST00000453002 341 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 ACA64.1-201ENST00000459171 127 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 RNA5SP434-201ENST00000516647 121 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 IGKV1D-22-201ENST00000518953 324 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC084337.1-201ENST00000524809 686 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AP005119.1-201ENST00000580956 292 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 FAM72A-208ENST00000607379 1139 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC119674.1-202ENST00000641333 1860 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC011455.2-201ENST00000599320 3336 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE4Q8N205 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 AC127024.8-201ENST00000623719 2094 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 AL157831.2-201ENST00000564681 3095 ntBASIC7.82□□□□□ -1.16
SYNE4Q8N205 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE4Q8N205 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC7.81□□□□□ -1.16
SYNE4Q8N205 MTCO1P46-201ENST00000451639 1491 ntBASIC7.81□□□□□ -1.16
SYNE4Q8N205 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE4Q8N205 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms