Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.92□□□□□ -1.46
LIM2P55344 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.92□□□□□ -1.46
LIM2P55344 OR4A40P-201ENST00000533878 948 ntBASIC5.92□□□□□ -1.46
LIM2P55344 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.92□□□□□ -1.46
LIM2P55344 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.92□□□□□ -1.46
LIM2P55344 BMS1P16-201ENST00000556075 1147 ntBASIC5.92□□□□□ -1.46
LIM2P55344 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 MIR3189-201ENST00000578735 73 ntBASIC5.92□□□□□ -1.46
LIM2P55344 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.92□□□□□ -1.46
LIM2P55344 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.92□□□□□ -1.46
LIM2P55344 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 RPSAP75-201ENST00000605848 301 ntBASIC5.92□□□□□ -1.46
LIM2P55344 AC005828.7-201ENST00000607331 556 ntBASIC5.92□□□□□ -1.46
LIM2P55344 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.92□□□□□ -1.46
LIM2P55344 AC087269.2-201ENST00000641764 975 ntBASIC5.92□□□□□ -1.46
LIM2P55344 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 AP004289.1-201ENST00000436307 2205 ntBASIC5.92□□□□□ -1.46
LIM2P55344 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
LIM2P55344 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LIM2P55344 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
LIM2P55344 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.92□□□□□ -1.46
LIM2P55344 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
LIM2P55344 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.91□□□□□ -1.46
LIM2P55344 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
LIM2P55344 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 MIR188-201ENST00000385034 86 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AC099782.1-201ENST00000425889 474 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 PPIAP10-201ENST00000438675 458 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AL645936.1-201ENST00000441979 518 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 RN7SL221P-201ENST00000466190 281 ntBASIC5.91□□□□□ -1.46
LIM2P55344 MARK2P8-201ENST00000476069 952 ntBASIC5.91□□□□□ -1.46
LIM2P55344 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 EIF4E2P2-201ENST00000492033 736 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.91□□□□□ -1.46
LIM2P55344 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 ZNF519P4-201ENST00000514008 125 ntBASIC5.91□□□□□ -1.46
LIM2P55344 RNA5SP400-201ENST00000517155 111 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.91□□□□□ -1.46
LIM2P55344 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.91□□□□□ -1.46
LIM2P55344 OR4H6P-201ENST00000563771 921 ntBASIC5.91□□□□□ -1.46
LIM2P55344 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 AC027229.1-201ENST00000583887 253 ntBASIC5.91□□□□□ -1.46
LIM2P55344 DYNLL1P1-201ENST00000595442 269 ntBASIC5.91□□□□□ -1.46
LIM2P55344 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.91□□□□□ -1.46
LIM2P55344 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.91□□□□□ -1.46
LIM2P55344 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
LIM2P55344 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
LIM2P55344 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.91□□□□□ -1.46
LIM2P55344 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIM2P55344 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.91□□□□□ -1.46
LIM2P55344 MTND5P12-201ENST00000502851 1449 ntBASIC5.91□□□□□ -1.46
LIM2P55344 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIM2P55344 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIM2P55344 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.9□□□□□ -1.46
LIM2P55344 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIM2P55344 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIM2P55344 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 AP001541.1-201ENST00000623322 1904 ntBASIC5.9□□□□□ -1.46
LIM2P55344 RNU1-49P-201ENST00000363468 159 ntBASIC5.9□□□□□ -1.46
LIM2P55344 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LIM2P55344 AL359885.1-201ENST00000415786 903 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms