Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.94□□□□□ -1.46
FOXA1P55317 RPS19P6-201ENST00000441327 433 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 CXCR2P1-202ENST00000443392 1074 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AL512593.1-201ENST00000444758 779 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 RPL12P7-201ENST00000493832 494 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.94□□□□□ -1.46
FOXA1P55317 TPM3P3-201ENST00000521343 354 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC244502.2-201ENST00000543361 851 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.94□□□□□ -1.46
FOXA1P55317 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC025283.1-201ENST00000572039 734 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 AL591222.2-201ENST00000604443 754 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC008555.7-201ENST00000605008 583 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.94□□□□□ -1.46
FOXA1P55317 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 EIF3EP1-201ENST00000433978 1316 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 AC079248.1-201ENST00000427568 1546 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
FOXA1P55317 AC084782.1-201ENST00000564401 2465 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC5.93□□□□□ -1.46
FOXA1P55317 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.93□□□□□ -1.46
FOXA1P55317 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 RPL11P4-201ENST00000332269 436 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 RNA5SP375-201ENST00000362975 119 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.93□□□□□ -1.46
FOXA1P55317 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC017035.1-201ENST00000411999 1115 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AC068138.1-201ENST00000412635 217 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC245884.2-201ENST00000426257 404 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AC094019.1-201ENST00000434678 472 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 RPS7P11-201ENST00000484240 586 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 KHDC1P1-201ENST00000511053 508 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC063977.7-201ENST00000594454 337 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AC141002.1-201ENST00000607025 279 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 GAPDHP41-201ENST00000613707 975 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 MIR6883-201ENST00000614952 78 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 AC021422.1-201ENST00000621212 473 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.93□□□□□ -1.46
FOXA1P55317 AL669831.5-218ENST00000591702 1873 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 AC011416.1-201ENST00000514947 1732 ntBASIC5.93□□□□□ -1.46
FOXA1P55317 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.93□□□□□ -1.46
FOXA1P55317 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
FOXA1P55317 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
FOXA1P55317 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 AC217777.1-201ENST00000570034 1471 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
FOXA1P55317 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
FOXA1P55317 AL121977.1-201ENST00000401636 979 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 AL031681.1-201ENST00000443304 400 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.92□□□□□ -1.46
FOXA1P55317 PPIAP32-201ENST00000449940 472 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 RAB28P2-201ENST00000454299 641 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 AC022730.1-201ENST00000473114 568 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 RN7SL104P-201ENST00000498686 293 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.92□□□□□ -1.46
FOXA1P55317 AC114324.2-202ENST00000503812 134 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.92□□□□□ -1.46
FOXA1P55317 AC093816.1-201ENST00000515076 913 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms