Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC8.68□□□□□ -1.02
MSH6P52701 RMST-210ENST00000640149 2844 ntTSL 5 BASIC8.68□□□□□ -1.02
MSH6P52701 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
MSH6P52701 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
MSH6P52701 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC8.68□□□□□ -1.02
MSH6P52701 AC009237.1-201ENST00000442127 744 ntBASIC8.68□□□□□ -1.02
MSH6P52701 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC8.68□□□□□ -1.02
MSH6P52701 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
MSH6P52701 AL133445.1-201ENST00000467051 452 ntBASIC8.68□□□□□ -1.02
MSH6P52701 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH6P52701 MIR4776-2-201ENST00000580204 80 ntBASIC8.68□□□□□ -1.02
MSH6P52701 MIR1269B-201ENST00000580405 75 ntBASIC8.68□□□□□ -1.02
MSH6P52701 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC8.68□□□□□ -1.02
MSH6P52701 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC8.68□□□□□ -1.02
MSH6P52701 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC8.68□□□□□ -1.02
MSH6P52701 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC8.68□□□□□ -1.02
MSH6P52701 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
MSH6P52701 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC8.67□□□□□ -1.02
MSH6P52701 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 AP005139.1-201ENST00000580702 1647 ntBASIC8.67□□□□□ -1.02
MSH6P52701 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 AC027088.4-201ENST00000611559 1947 ntBASIC8.67□□□□□ -1.02
MSH6P52701 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC8.67□□□□□ -1.02
MSH6P52701 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 LSM5-203ENST00000409782 649 ntTSL 5 BASIC8.67□□□□□ -1.02
MSH6P52701 AP000534.2-201ENST00000412729 568 ntBASIC8.67□□□□□ -1.02
MSH6P52701 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC8.67□□□□□ -1.02
MSH6P52701 SUMO2P10-201ENST00000452006 288 ntBASIC8.67□□□□□ -1.02
MSH6P52701 AC022325.1-201ENST00000502748 2199 ntBASIC8.67□□□□□ -1.02
MSH6P52701 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH6P52701 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC8.67□□□□□ -1.02
MSH6P52701 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC8.67□□□□□ -1.02
MSH6P52701 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 FO393422.1-201ENST00000603908 708 ntBASIC8.67□□□□□ -1.02
MSH6P52701 AC024940.4-201ENST00000605507 246 ntBASIC8.67□□□□□ -1.02
MSH6P52701 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH6P52701 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH6P52701 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH6P52701 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
MSH6P52701 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
MSH6P52701 AC241584.2-201ENST00000637142 2090 ntBASIC8.67□□□□□ -1.02
MSH6P52701 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH6P52701 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC8.66□□□□□ -1.02
MSH6P52701 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC8.66□□□□□ -1.02
MSH6P52701 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
MSH6P52701 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH6P52701 H2AFZP6-201ENST00000444403 394 ntBASIC8.66□□□□□ -1.02
MSH6P52701 GEMIN2P1-201ENST00000454246 752 ntBASIC8.66□□□□□ -1.02
MSH6P52701 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH6P52701 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH6P52701 RN7SL727P-201ENST00000482164 296 ntBASIC8.66□□□□□ -1.02
MSH6P52701 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC8.66□□□□□ -1.02
MSH6P52701 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH6P52701 GMFG-212ENST00000602185 423 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH6P52701 IMMP1LP3-201ENST00000604197 224 ntBASIC8.66□□□□□ -1.02
MSH6P52701 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
MSH6P52701 SAMMSON-227ENST00000642114 1199 ntBASIC8.66□□□□□ -1.02
MSH6P52701 CASC19-228ENST00000641414 1684 ntBASIC8.66□□□□□ -1.02
MSH6P52701 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 AC012213.2-201ENST00000562917 4597 ntBASIC8.66□□□□□ -1.02
MSH6P52701 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH6P52701 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 OFD1P10Y-201ENST00000434110 1433 ntBASIC8.65□□□□□ -1.02
MSH6P52701 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 CRP-204ENST00000368112 787 ntTSL 2 BASIC8.65□□□□□ -1.02
MSH6P52701 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC8.65□□□□□ -1.02
MSH6P52701 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC8.65□□□□□ -1.02
MSH6P52701 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC8.65□□□□□ -1.02
MSH6P52701 AC117395.1-201ENST00000487390 403 ntBASIC8.65□□□□□ -1.02
MSH6P52701 NDUFA5P12-201ENST00000503796 343 ntBASIC8.65□□□□□ -1.02
MSH6P52701 Y_RNA.710-201ENST00000516975 110 ntBASIC8.65□□□□□ -1.02
MSH6P52701 BICD1-206ENST00000551086 423 ntTSL 3 BASIC8.65□□□□□ -1.02
MSH6P52701 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH6P52701 AL136131.3-201ENST00000607600 188 ntBASIC8.65□□□□□ -1.02
MSH6P52701 AL137246.2-201ENST00000613439 662 ntBASIC8.65□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms