Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPINT1-AS1-204ENST00000568419 629 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 MTCYBP33-201ENST00000575007 1130 ntBASIC6.47□□□□□ -1.37
MSX2P35548 MIR4262-201ENST00000578394 54 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 CTSLP2-201ENST00000580501 394 ntBASIC6.47□□□□□ -1.37
MSX2P35548 MIR4258-201ENST00000580920 91 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX2P35548 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 AC113368.1-201ENST00000603736 382 ntBASIC6.47□□□□□ -1.37
MSX2P35548 RNU4-5P-201ENST00000607255 135 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX2P35548 AP003499.2-201ENST00000624100 483 ntBASIC6.47□□□□□ -1.37
MSX2P35548 AC018793.5-201ENST00000640302 585 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
MSX2P35548 AP001153.1-201ENST00000641024 338 ntBASIC6.47□□□□□ -1.37
MSX2P35548 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
MSX2P35548 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
MSX2P35548 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
MSX2P35548 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX2P35548 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX2P35548 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.46□□□□□ -1.37
MSX2P35548 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.46□□□□□ -1.37
MSX2P35548 THAP12P8-201ENST00000447914 2115 ntBASIC6.46□□□□□ -1.37
MSX2P35548 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 IFNA7-201ENST00000239347 737 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
MSX2P35548 SKINT1L-201ENST00000401057 817 ntBASIC6.46□□□□□ -1.38
MSX2P35548 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 RN7SKP89-201ENST00000410774 242 ntBASIC6.46□□□□□ -1.38
MSX2P35548 RNU4-64P-201ENST00000410795 131 ntBASIC6.46□□□□□ -1.38
MSX2P35548 NANOGP5-201ENST00000424456 877 ntBASIC6.46□□□□□ -1.38
MSX2P35548 MTND1P10-201ENST00000426108 832 ntBASIC6.46□□□□□ -1.38
MSX2P35548 VN1R21P-201ENST00000426703 765 ntBASIC6.46□□□□□ -1.38
MSX2P35548 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 AL161626.1-201ENST00000441480 490 ntBASIC6.46□□□□□ -1.38
MSX2P35548 MTCYBP21-201ENST00000443300 1113 ntBASIC6.46□□□□□ -1.38
MSX2P35548 MIR4500HG-204ENST00000453832 827 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 AL139156.3-201ENST00000454802 394 ntBASIC6.46□□□□□ -1.38
MSX2P35548 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 RN7SL508P-201ENST00000464472 303 ntBASIC6.46□□□□□ -1.38
MSX2P35548 AC093663.2-201ENST00000484625 313 ntBASIC6.46□□□□□ -1.38
MSX2P35548 RN7SL205P-201ENST00000490174 284 ntBASIC6.46□□□□□ -1.38
MSX2P35548 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 RN7SL306P-201ENST00000492941 296 ntBASIC6.46□□□□□ -1.38
MSX2P35548 MTND4LP2-201ENST00000502312 285 ntBASIC6.46□□□□□ -1.38
MSX2P35548 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC6.46□□□□□ -1.38
MSX2P35548 MTND6P8-201ENST00000503471 522 ntBASIC6.46□□□□□ -1.38
MSX2P35548 SUMO2P5-201ENST00000506790 245 ntBASIC6.46□□□□□ -1.38
MSX2P35548 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.46□□□□□ -1.38
MSX2P35548 SCARNA6-201ENST00000515982 265 ntBASIC6.46□□□□□ -1.38
MSX2P35548 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 PSMC1P8-201ENST00000536820 1296 ntBASIC6.46□□□□□ -1.38
MSX2P35548 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 RPS7P1-201ENST00000571702 585 ntBASIC6.46□□□□□ -1.38
MSX2P35548 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 AC008635.1-201ENST00000600716 562 ntTSL 4 BASIC6.46□□□□□ -1.38
MSX2P35548 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 AC124016.2-201ENST00000610058 665 ntBASIC6.46□□□□□ -1.38
MSX2P35548 RNU6-1192P-201ENST00000612197 107 ntBASIC6.46□□□□□ -1.38
MSX2P35548 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 RNU6-489P-201ENST00000618289 107 ntBASIC6.46□□□□□ -1.38
MSX2P35548 AC008115.4-201ENST00000619780 775 ntBASIC6.46□□□□□ -1.38
MSX2P35548 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 AC018659.2-201ENST00000624690 715 ntBASIC6.46□□□□□ -1.38
MSX2P35548 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
MSX2P35548 CASP4-201ENST00000393150 1340 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSX2P35548 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC6.46□□□□□ -1.38
MSX2P35548 AP003486.1-201ENST00000525716 3994 ntBASIC6.46□□□□□ -1.38
MSX2P35548 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.46□□□□□ -1.38
MSX2P35548 TMCC1P1-201ENST00000518897 1980 ntBASIC6.46□□□□□ -1.38
MSX2P35548 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 PACRG-202ENST00000366888 1373 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
MSX2P35548 AKAP17BP-201ENST00000431706 2719 ntBASIC6.45□□□□□ -1.38
MSX2P35548 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
MSX2P35548 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX2P35548 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms